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PASSIFOR: A reference library of DNA barcodes for French saproxylic beetles (Insecta, Coleoptera)

Abstract. Saproxylic beetles – associated with dead wood or with other insects, fungi and microorganisms that decompose it – play a major role in forest nutrient cycling. They are important ecosystem service providers and are used as key bio-indicators of old-growth forests. In France alone, where t...

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Autores principales: Rougerie, Rodolphe, Lopez-Vaamonde, Carlos, Barnouin, Thomas, Delnatte, Julien, Moulin, Nicolas, Noblecourt, Thierry, Nusillard, Benoît, Parmain, Guillem, Soldati, Fabien, Bouget, Christophe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4355675/
https://www.ncbi.nlm.nih.gov/pubmed/25829855
http://dx.doi.org/10.3897/BDJ.3.e4078
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author Rougerie, Rodolphe
Lopez-Vaamonde, Carlos
Barnouin, Thomas
Delnatte, Julien
Moulin, Nicolas
Noblecourt, Thierry
Nusillard, Benoît
Parmain, Guillem
Soldati, Fabien
Bouget, Christophe
author_facet Rougerie, Rodolphe
Lopez-Vaamonde, Carlos
Barnouin, Thomas
Delnatte, Julien
Moulin, Nicolas
Noblecourt, Thierry
Nusillard, Benoît
Parmain, Guillem
Soldati, Fabien
Bouget, Christophe
author_sort Rougerie, Rodolphe
collection PubMed
description Abstract. Saproxylic beetles – associated with dead wood or with other insects, fungi and microorganisms that decompose it – play a major role in forest nutrient cycling. They are important ecosystem service providers and are used as key bio-indicators of old-growth forests. In France alone, where the present study took place, there are about 2500 species distributed within 71 families. This high diversity represents a major challenge for specimen sorting and identification. The PASSIFOR project aims at developing a DNA metabarcoding approach to facilitate and enhance the monitoring of saproxylic beetles as indicators in ecological studies. As a first step toward that goal we assembled a library of DNA barcodes using the standard genetic marker for animals, i.e. a portion of the COI mitochondrial gene. In the present contribution, we release a library including 656 records representing 410 species in 40 different families. Species were identified by expert taxonomists, and each record is linked to a voucher specimen to enable future morphological examination. We also highlight and briefly discuss cases of low interspecific divergences, as well as cases of high intraspecific divergences that might represent cases of overlooked or cryptic diversity.
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spelling pubmed-43556752015-03-31 PASSIFOR: A reference library of DNA barcodes for French saproxylic beetles (Insecta, Coleoptera) Rougerie, Rodolphe Lopez-Vaamonde, Carlos Barnouin, Thomas Delnatte, Julien Moulin, Nicolas Noblecourt, Thierry Nusillard, Benoît Parmain, Guillem Soldati, Fabien Bouget, Christophe Biodivers Data J Data Paper Abstract. Saproxylic beetles – associated with dead wood or with other insects, fungi and microorganisms that decompose it – play a major role in forest nutrient cycling. They are important ecosystem service providers and are used as key bio-indicators of old-growth forests. In France alone, where the present study took place, there are about 2500 species distributed within 71 families. This high diversity represents a major challenge for specimen sorting and identification. The PASSIFOR project aims at developing a DNA metabarcoding approach to facilitate and enhance the monitoring of saproxylic beetles as indicators in ecological studies. As a first step toward that goal we assembled a library of DNA barcodes using the standard genetic marker for animals, i.e. a portion of the COI mitochondrial gene. In the present contribution, we release a library including 656 records representing 410 species in 40 different families. Species were identified by expert taxonomists, and each record is linked to a voucher specimen to enable future morphological examination. We also highlight and briefly discuss cases of low interspecific divergences, as well as cases of high intraspecific divergences that might represent cases of overlooked or cryptic diversity. Pensoft Publishers 2015-03-04 /pmc/articles/PMC4355675/ /pubmed/25829855 http://dx.doi.org/10.3897/BDJ.3.e4078 Text en Rodolphe Rougerie, Carlos Lopez-Vaamonde, Thomas Barnouin, Julien Delnatte, Nicolas Moulin, Thierry Noblecourt, Benoît Nusillard, Guillem Parmain, Fabien Soldati, Christophe Bouget http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Data Paper
Rougerie, Rodolphe
Lopez-Vaamonde, Carlos
Barnouin, Thomas
Delnatte, Julien
Moulin, Nicolas
Noblecourt, Thierry
Nusillard, Benoît
Parmain, Guillem
Soldati, Fabien
Bouget, Christophe
PASSIFOR: A reference library of DNA barcodes for French saproxylic beetles (Insecta, Coleoptera)
title PASSIFOR: A reference library of DNA barcodes for French saproxylic beetles (Insecta, Coleoptera)
title_full PASSIFOR: A reference library of DNA barcodes for French saproxylic beetles (Insecta, Coleoptera)
title_fullStr PASSIFOR: A reference library of DNA barcodes for French saproxylic beetles (Insecta, Coleoptera)
title_full_unstemmed PASSIFOR: A reference library of DNA barcodes for French saproxylic beetles (Insecta, Coleoptera)
title_short PASSIFOR: A reference library of DNA barcodes for French saproxylic beetles (Insecta, Coleoptera)
title_sort passifor: a reference library of dna barcodes for french saproxylic beetles (insecta, coleoptera)
topic Data Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4355675/
https://www.ncbi.nlm.nih.gov/pubmed/25829855
http://dx.doi.org/10.3897/BDJ.3.e4078
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