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Bayesian inference for low-rank Ising networks
Estimating the structure of Ising networks is a notoriously difficult problem. We demonstrate that using a latent variable representation of the Ising network, we can employ a full-data-information approach to uncover the network structure. Thereby, only ignoring information encoded in the prior dis...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4356966/ https://www.ncbi.nlm.nih.gov/pubmed/25761415 http://dx.doi.org/10.1038/srep09050 |
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author | Marsman, Maarten Maris, Gunter Bechger, Timo Glas, Cees |
author_facet | Marsman, Maarten Maris, Gunter Bechger, Timo Glas, Cees |
author_sort | Marsman, Maarten |
collection | PubMed |
description | Estimating the structure of Ising networks is a notoriously difficult problem. We demonstrate that using a latent variable representation of the Ising network, we can employ a full-data-information approach to uncover the network structure. Thereby, only ignoring information encoded in the prior distribution (of the latent variables). The full-data-information approach avoids having to compute the partition function and is thus computationally feasible, even for networks with many nodes. We illustrate the full-data-information approach with the estimation of dense networks. |
format | Online Article Text |
id | pubmed-4356966 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-43569662015-03-17 Bayesian inference for low-rank Ising networks Marsman, Maarten Maris, Gunter Bechger, Timo Glas, Cees Sci Rep Article Estimating the structure of Ising networks is a notoriously difficult problem. We demonstrate that using a latent variable representation of the Ising network, we can employ a full-data-information approach to uncover the network structure. Thereby, only ignoring information encoded in the prior distribution (of the latent variables). The full-data-information approach avoids having to compute the partition function and is thus computationally feasible, even for networks with many nodes. We illustrate the full-data-information approach with the estimation of dense networks. Nature Publishing Group 2015-03-12 /pmc/articles/PMC4356966/ /pubmed/25761415 http://dx.doi.org/10.1038/srep09050 Text en Copyright © 2015, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Marsman, Maarten Maris, Gunter Bechger, Timo Glas, Cees Bayesian inference for low-rank Ising networks |
title | Bayesian inference for low-rank Ising networks |
title_full | Bayesian inference for low-rank Ising networks |
title_fullStr | Bayesian inference for low-rank Ising networks |
title_full_unstemmed | Bayesian inference for low-rank Ising networks |
title_short | Bayesian inference for low-rank Ising networks |
title_sort | bayesian inference for low-rank ising networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4356966/ https://www.ncbi.nlm.nih.gov/pubmed/25761415 http://dx.doi.org/10.1038/srep09050 |
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