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Shared resources, shared costs—leveraging biocuration resources
The manual curation of the information in biomedical resources is an expensive task. This article argues the value of this approach in comparison with other apparently less costly options, such as automated annotation or text-mining, then discusses ways in which databases can make cost savings by sh...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4360620/ https://www.ncbi.nlm.nih.gov/pubmed/25776020 http://dx.doi.org/10.1093/database/bav009 |
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author | Orchard, Sandra Hermjakob, Henning |
author_facet | Orchard, Sandra Hermjakob, Henning |
author_sort | Orchard, Sandra |
collection | PubMed |
description | The manual curation of the information in biomedical resources is an expensive task. This article argues the value of this approach in comparison with other apparently less costly options, such as automated annotation or text-mining, then discusses ways in which databases can make cost savings by sharing infrastructure and tool development. Sharing curation effort is a model already being adopted by several data resources. Approaches taken by two of these, the Gene Ontology annotation effort and the IntAct molecular interaction database, are reviewed in more detail. These models help to ensure long-term persistence of curated data and minimizes redundant development of resources by multiple disparate groups. Database URL: http://www.ebi.ac.uk/intact and http://www.ebi.ac.uk/GOA/ |
format | Online Article Text |
id | pubmed-4360620 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-43606202015-03-23 Shared resources, shared costs—leveraging biocuration resources Orchard, Sandra Hermjakob, Henning Database (Oxford) Original Article The manual curation of the information in biomedical resources is an expensive task. This article argues the value of this approach in comparison with other apparently less costly options, such as automated annotation or text-mining, then discusses ways in which databases can make cost savings by sharing infrastructure and tool development. Sharing curation effort is a model already being adopted by several data resources. Approaches taken by two of these, the Gene Ontology annotation effort and the IntAct molecular interaction database, are reviewed in more detail. These models help to ensure long-term persistence of curated data and minimizes redundant development of resources by multiple disparate groups. Database URL: http://www.ebi.ac.uk/intact and http://www.ebi.ac.uk/GOA/ Oxford University Press 2015-03-16 /pmc/articles/PMC4360620/ /pubmed/25776020 http://dx.doi.org/10.1093/database/bav009 Text en © The Author(s) 2015. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Orchard, Sandra Hermjakob, Henning Shared resources, shared costs—leveraging biocuration resources |
title | Shared resources, shared costs—leveraging biocuration resources |
title_full | Shared resources, shared costs—leveraging biocuration resources |
title_fullStr | Shared resources, shared costs—leveraging biocuration resources |
title_full_unstemmed | Shared resources, shared costs—leveraging biocuration resources |
title_short | Shared resources, shared costs—leveraging biocuration resources |
title_sort | shared resources, shared costs—leveraging biocuration resources |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4360620/ https://www.ncbi.nlm.nih.gov/pubmed/25776020 http://dx.doi.org/10.1093/database/bav009 |
work_keys_str_mv | AT orchardsandra sharedresourcessharedcostsleveragingbiocurationresources AT hermjakobhenning sharedresourcessharedcostsleveragingbiocurationresources |