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Shared resources, shared costs—leveraging biocuration resources

The manual curation of the information in biomedical resources is an expensive task. This article argues the value of this approach in comparison with other apparently less costly options, such as automated annotation or text-mining, then discusses ways in which databases can make cost savings by sh...

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Detalles Bibliográficos
Autores principales: Orchard, Sandra, Hermjakob, Henning
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4360620/
https://www.ncbi.nlm.nih.gov/pubmed/25776020
http://dx.doi.org/10.1093/database/bav009
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author Orchard, Sandra
Hermjakob, Henning
author_facet Orchard, Sandra
Hermjakob, Henning
author_sort Orchard, Sandra
collection PubMed
description The manual curation of the information in biomedical resources is an expensive task. This article argues the value of this approach in comparison with other apparently less costly options, such as automated annotation or text-mining, then discusses ways in which databases can make cost savings by sharing infrastructure and tool development. Sharing curation effort is a model already being adopted by several data resources. Approaches taken by two of these, the Gene Ontology annotation effort and the IntAct molecular interaction database, are reviewed in more detail. These models help to ensure long-term persistence of curated data and minimizes redundant development of resources by multiple disparate groups. Database URL: http://www.ebi.ac.uk/intact and http://www.ebi.ac.uk/GOA/
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spelling pubmed-43606202015-03-23 Shared resources, shared costs—leveraging biocuration resources Orchard, Sandra Hermjakob, Henning Database (Oxford) Original Article The manual curation of the information in biomedical resources is an expensive task. This article argues the value of this approach in comparison with other apparently less costly options, such as automated annotation or text-mining, then discusses ways in which databases can make cost savings by sharing infrastructure and tool development. Sharing curation effort is a model already being adopted by several data resources. Approaches taken by two of these, the Gene Ontology annotation effort and the IntAct molecular interaction database, are reviewed in more detail. These models help to ensure long-term persistence of curated data and minimizes redundant development of resources by multiple disparate groups. Database URL: http://www.ebi.ac.uk/intact and http://www.ebi.ac.uk/GOA/ Oxford University Press 2015-03-16 /pmc/articles/PMC4360620/ /pubmed/25776020 http://dx.doi.org/10.1093/database/bav009 Text en © The Author(s) 2015. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Orchard, Sandra
Hermjakob, Henning
Shared resources, shared costs—leveraging biocuration resources
title Shared resources, shared costs—leveraging biocuration resources
title_full Shared resources, shared costs—leveraging biocuration resources
title_fullStr Shared resources, shared costs—leveraging biocuration resources
title_full_unstemmed Shared resources, shared costs—leveraging biocuration resources
title_short Shared resources, shared costs—leveraging biocuration resources
title_sort shared resources, shared costs—leveraging biocuration resources
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4360620/
https://www.ncbi.nlm.nih.gov/pubmed/25776020
http://dx.doi.org/10.1093/database/bav009
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