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Exome sequencing of case-unaffected-parents trios reveals recessive and de novo genetic variants in sporadic ALS
The contribution of genetic variants to sporadic amyotrophic lateral sclerosis (ALS) remains largely unknown. Either recessive or de novo variants could result in an apparently sporadic occurrence of ALS. In an attempt to find such variants we sequenced the exomes of 44 ALS-unaffected-parents trios....
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4360641/ https://www.ncbi.nlm.nih.gov/pubmed/25773295 http://dx.doi.org/10.1038/srep09124 |
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author | Steinberg, Karyn Meltz Yu, Bing Koboldt, Daniel C. Mardis, Elaine R. Pamphlett, Roger |
author_facet | Steinberg, Karyn Meltz Yu, Bing Koboldt, Daniel C. Mardis, Elaine R. Pamphlett, Roger |
author_sort | Steinberg, Karyn Meltz |
collection | PubMed |
description | The contribution of genetic variants to sporadic amyotrophic lateral sclerosis (ALS) remains largely unknown. Either recessive or de novo variants could result in an apparently sporadic occurrence of ALS. In an attempt to find such variants we sequenced the exomes of 44 ALS-unaffected-parents trios. Rare and potentially damaging compound heterozygous variants were found in 27% of ALS patients, homozygous recessive variants in 14% and coding de novo variants in 27%. In 20% of patients more than one of the above variants was present. Genes with recessive variants were enriched in nucleotide binding capacity, ATPase activity, and the dynein heavy chain. Genes with de novo variants were enriched in transcription regulation and cell cycle processes. This trio study indicates that rare private recessive variants could be a mechanism underlying some case of sporadic ALS, and that de novo mutations are also likely to play a part in the disease. |
format | Online Article Text |
id | pubmed-4360641 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-43606412015-03-19 Exome sequencing of case-unaffected-parents trios reveals recessive and de novo genetic variants in sporadic ALS Steinberg, Karyn Meltz Yu, Bing Koboldt, Daniel C. Mardis, Elaine R. Pamphlett, Roger Sci Rep Article The contribution of genetic variants to sporadic amyotrophic lateral sclerosis (ALS) remains largely unknown. Either recessive or de novo variants could result in an apparently sporadic occurrence of ALS. In an attempt to find such variants we sequenced the exomes of 44 ALS-unaffected-parents trios. Rare and potentially damaging compound heterozygous variants were found in 27% of ALS patients, homozygous recessive variants in 14% and coding de novo variants in 27%. In 20% of patients more than one of the above variants was present. Genes with recessive variants were enriched in nucleotide binding capacity, ATPase activity, and the dynein heavy chain. Genes with de novo variants were enriched in transcription regulation and cell cycle processes. This trio study indicates that rare private recessive variants could be a mechanism underlying some case of sporadic ALS, and that de novo mutations are also likely to play a part in the disease. Nature Publishing Group 2015-03-16 /pmc/articles/PMC4360641/ /pubmed/25773295 http://dx.doi.org/10.1038/srep09124 Text en Copyright © 2015, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Steinberg, Karyn Meltz Yu, Bing Koboldt, Daniel C. Mardis, Elaine R. Pamphlett, Roger Exome sequencing of case-unaffected-parents trios reveals recessive and de novo genetic variants in sporadic ALS |
title | Exome sequencing of case-unaffected-parents trios reveals recessive and de novo genetic variants in sporadic ALS |
title_full | Exome sequencing of case-unaffected-parents trios reveals recessive and de novo genetic variants in sporadic ALS |
title_fullStr | Exome sequencing of case-unaffected-parents trios reveals recessive and de novo genetic variants in sporadic ALS |
title_full_unstemmed | Exome sequencing of case-unaffected-parents trios reveals recessive and de novo genetic variants in sporadic ALS |
title_short | Exome sequencing of case-unaffected-parents trios reveals recessive and de novo genetic variants in sporadic ALS |
title_sort | exome sequencing of case-unaffected-parents trios reveals recessive and de novo genetic variants in sporadic als |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4360641/ https://www.ncbi.nlm.nih.gov/pubmed/25773295 http://dx.doi.org/10.1038/srep09124 |
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