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Bridging a translational gap: using machine learning to improve the prediction of PTSD
BACKGROUND: Predicting Posttraumatic Stress Disorder (PTSD) is a pre-requisite for targeted prevention. Current research has identified group-level risk-indicators, many of which (e.g., head trauma, receiving opiates) concern but a subset of survivors. Identifying interchangeable sets of risk indica...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4360940/ https://www.ncbi.nlm.nih.gov/pubmed/25886446 http://dx.doi.org/10.1186/s12888-015-0399-8 |
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author | Karstoft, Karen-Inge Galatzer-Levy, Isaac R Statnikov, Alexander Li, Zhiguo Shalev, Arieh Y |
author_facet | Karstoft, Karen-Inge Galatzer-Levy, Isaac R Statnikov, Alexander Li, Zhiguo Shalev, Arieh Y |
author_sort | Karstoft, Karen-Inge |
collection | PubMed |
description | BACKGROUND: Predicting Posttraumatic Stress Disorder (PTSD) is a pre-requisite for targeted prevention. Current research has identified group-level risk-indicators, many of which (e.g., head trauma, receiving opiates) concern but a subset of survivors. Identifying interchangeable sets of risk indicators may increase the efficiency of early risk assessment. The study goal is to use supervised machine learning (ML) to uncover interchangeable, maximally predictive combinations of early risk indicators. METHODS: Data variables (features) reflecting event characteristics, emergency department (ED) records and early symptoms were collected in 957 trauma survivors within ten days of ED admission, and used to predict PTSD symptom trajectories during the following fifteen months. A Target Information Equivalence Algorithm (TIE*) identified all minimal sets of features (Markov Boundaries; MBs) that maximized the prediction of a non-remitting PTSD symptom trajectory when integrated in a support vector machine (SVM). The predictive accuracy of each set of predictors was evaluated in a repeated 10-fold cross-validation and expressed as average area under the Receiver Operating Characteristics curve (AUC) for all validation trials. RESULTS: The average number of MBs per cross validation was 800. MBs’ mean AUC was 0.75 (95% range: 0.67-0.80). The average number of features per MB was 18 (range: 12–32) with 13 features present in over 75% of the sets. CONCLUSIONS: Our findings support the hypothesized existence of multiple and interchangeable sets of risk indicators that equally and exhaustively predict non-remitting PTSD. ML’s ability to increase prediction versatility is a promising step towards developing algorithmic, knowledge-based, personalized prediction of post-traumatic psychopathology. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12888-015-0399-8) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4360940 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-43609402015-03-17 Bridging a translational gap: using machine learning to improve the prediction of PTSD Karstoft, Karen-Inge Galatzer-Levy, Isaac R Statnikov, Alexander Li, Zhiguo Shalev, Arieh Y BMC Psychiatry Research Article BACKGROUND: Predicting Posttraumatic Stress Disorder (PTSD) is a pre-requisite for targeted prevention. Current research has identified group-level risk-indicators, many of which (e.g., head trauma, receiving opiates) concern but a subset of survivors. Identifying interchangeable sets of risk indicators may increase the efficiency of early risk assessment. The study goal is to use supervised machine learning (ML) to uncover interchangeable, maximally predictive combinations of early risk indicators. METHODS: Data variables (features) reflecting event characteristics, emergency department (ED) records and early symptoms were collected in 957 trauma survivors within ten days of ED admission, and used to predict PTSD symptom trajectories during the following fifteen months. A Target Information Equivalence Algorithm (TIE*) identified all minimal sets of features (Markov Boundaries; MBs) that maximized the prediction of a non-remitting PTSD symptom trajectory when integrated in a support vector machine (SVM). The predictive accuracy of each set of predictors was evaluated in a repeated 10-fold cross-validation and expressed as average area under the Receiver Operating Characteristics curve (AUC) for all validation trials. RESULTS: The average number of MBs per cross validation was 800. MBs’ mean AUC was 0.75 (95% range: 0.67-0.80). The average number of features per MB was 18 (range: 12–32) with 13 features present in over 75% of the sets. CONCLUSIONS: Our findings support the hypothesized existence of multiple and interchangeable sets of risk indicators that equally and exhaustively predict non-remitting PTSD. ML’s ability to increase prediction versatility is a promising step towards developing algorithmic, knowledge-based, personalized prediction of post-traumatic psychopathology. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12888-015-0399-8) contains supplementary material, which is available to authorized users. BioMed Central 2015-03-16 /pmc/articles/PMC4360940/ /pubmed/25886446 http://dx.doi.org/10.1186/s12888-015-0399-8 Text en © Karstoft et al.; licensee BioMed Central. 2015 This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Karstoft, Karen-Inge Galatzer-Levy, Isaac R Statnikov, Alexander Li, Zhiguo Shalev, Arieh Y Bridging a translational gap: using machine learning to improve the prediction of PTSD |
title | Bridging a translational gap: using machine learning to improve the prediction of PTSD |
title_full | Bridging a translational gap: using machine learning to improve the prediction of PTSD |
title_fullStr | Bridging a translational gap: using machine learning to improve the prediction of PTSD |
title_full_unstemmed | Bridging a translational gap: using machine learning to improve the prediction of PTSD |
title_short | Bridging a translational gap: using machine learning to improve the prediction of PTSD |
title_sort | bridging a translational gap: using machine learning to improve the prediction of ptsd |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4360940/ https://www.ncbi.nlm.nih.gov/pubmed/25886446 http://dx.doi.org/10.1186/s12888-015-0399-8 |
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