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Whole-exome sequencing identifies OR2W3 mutation as a cause of autosomal dominant retinitis pigmentosa
Retinitis pigmentosa (RP), a heterogeneous group of inherited ocular diseases, is a genetic condition that causes retinal degeneration and eventual vision loss. Though some genes have been identified to be associated with RP, still a large part of the clinical cases could not be explained. Here we r...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4363838/ https://www.ncbi.nlm.nih.gov/pubmed/25783483 http://dx.doi.org/10.1038/srep09236 |
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author | Ma, Xiangyu Guan, Liping Wu, Wei Zhang, Yao Zheng, Wei Gao, Yu-Tang Long, Jirong Wu, Na Wu, Long Xiang, Ying Xu, Bin Shen, Miaozhong Chen, Yanhua Wang, Yuewen Yin, Ye Li, Yingrui Xu, Haiwei Xu, Xun Li, Yafei |
author_facet | Ma, Xiangyu Guan, Liping Wu, Wei Zhang, Yao Zheng, Wei Gao, Yu-Tang Long, Jirong Wu, Na Wu, Long Xiang, Ying Xu, Bin Shen, Miaozhong Chen, Yanhua Wang, Yuewen Yin, Ye Li, Yingrui Xu, Haiwei Xu, Xun Li, Yafei |
author_sort | Ma, Xiangyu |
collection | PubMed |
description | Retinitis pigmentosa (RP), a heterogeneous group of inherited ocular diseases, is a genetic condition that causes retinal degeneration and eventual vision loss. Though some genes have been identified to be associated with RP, still a large part of the clinical cases could not be explained. Here we reported a four-generation Chinese family with RP, during which 6 from 9 members of the second generation affected the disease. To identify the genetic defect in this family, whole-exome sequencing together with validation analysis by Sanger sequencing were performed to find possible pathogenic mutations. After a pipeline of database filtering, including public databases and in-house databases, a novel missense mutation, c. 424 C > T transition (p.R142W) in OR2W3 gene, was identified as a potentially causative mutation for autosomal dominant RP. The mutation co-segregated with the disease phenotype over four generations. This mutation was validated in another independent three-generation family. RT-PCR analysis also identified that OR2W3 gene was expressed in HESC-RPE cell line. The results will not only enhance our current understanding of the genetic basis of RP, but also provide helpful clues for designing future studies to further investigate genetic factors for familial RP. |
format | Online Article Text |
id | pubmed-4363838 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-43638382015-03-27 Whole-exome sequencing identifies OR2W3 mutation as a cause of autosomal dominant retinitis pigmentosa Ma, Xiangyu Guan, Liping Wu, Wei Zhang, Yao Zheng, Wei Gao, Yu-Tang Long, Jirong Wu, Na Wu, Long Xiang, Ying Xu, Bin Shen, Miaozhong Chen, Yanhua Wang, Yuewen Yin, Ye Li, Yingrui Xu, Haiwei Xu, Xun Li, Yafei Sci Rep Article Retinitis pigmentosa (RP), a heterogeneous group of inherited ocular diseases, is a genetic condition that causes retinal degeneration and eventual vision loss. Though some genes have been identified to be associated with RP, still a large part of the clinical cases could not be explained. Here we reported a four-generation Chinese family with RP, during which 6 from 9 members of the second generation affected the disease. To identify the genetic defect in this family, whole-exome sequencing together with validation analysis by Sanger sequencing were performed to find possible pathogenic mutations. After a pipeline of database filtering, including public databases and in-house databases, a novel missense mutation, c. 424 C > T transition (p.R142W) in OR2W3 gene, was identified as a potentially causative mutation for autosomal dominant RP. The mutation co-segregated with the disease phenotype over four generations. This mutation was validated in another independent three-generation family. RT-PCR analysis also identified that OR2W3 gene was expressed in HESC-RPE cell line. The results will not only enhance our current understanding of the genetic basis of RP, but also provide helpful clues for designing future studies to further investigate genetic factors for familial RP. Nature Publishing Group 2015-03-18 /pmc/articles/PMC4363838/ /pubmed/25783483 http://dx.doi.org/10.1038/srep09236 Text en Copyright © 2015, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Ma, Xiangyu Guan, Liping Wu, Wei Zhang, Yao Zheng, Wei Gao, Yu-Tang Long, Jirong Wu, Na Wu, Long Xiang, Ying Xu, Bin Shen, Miaozhong Chen, Yanhua Wang, Yuewen Yin, Ye Li, Yingrui Xu, Haiwei Xu, Xun Li, Yafei Whole-exome sequencing identifies OR2W3 mutation as a cause of autosomal dominant retinitis pigmentosa |
title | Whole-exome sequencing identifies OR2W3 mutation as a cause of autosomal dominant retinitis pigmentosa |
title_full | Whole-exome sequencing identifies OR2W3 mutation as a cause of autosomal dominant retinitis pigmentosa |
title_fullStr | Whole-exome sequencing identifies OR2W3 mutation as a cause of autosomal dominant retinitis pigmentosa |
title_full_unstemmed | Whole-exome sequencing identifies OR2W3 mutation as a cause of autosomal dominant retinitis pigmentosa |
title_short | Whole-exome sequencing identifies OR2W3 mutation as a cause of autosomal dominant retinitis pigmentosa |
title_sort | whole-exome sequencing identifies or2w3 mutation as a cause of autosomal dominant retinitis pigmentosa |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4363838/ https://www.ncbi.nlm.nih.gov/pubmed/25783483 http://dx.doi.org/10.1038/srep09236 |
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