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Abiotic ligation of DNA oligomers templated by their liquid crystal ordering

It has been observed that concentrated solutions of short DNA oligomers develop liquid crystal ordering as the result of a hierarchically structured supramolecular self-assembly. In mixtures of oligomers with various degree of complementarity, liquid crystal microdomains are formed via the selective...

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Autores principales: Fraccia, Tommaso P., Smith, Gregory P., Zanchetta, Giuliano, Paraboschi, Elvezia, Yi, Yougwooo, Walba, David M., Dieci, Giorgio, Clark, Noel A., Bellini, Tommaso
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Pub. Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4366493/
https://www.ncbi.nlm.nih.gov/pubmed/25752840
http://dx.doi.org/10.1038/ncomms7424
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author Fraccia, Tommaso P.
Smith, Gregory P.
Zanchetta, Giuliano
Paraboschi, Elvezia
Yi, Yougwooo
Walba, David M.
Dieci, Giorgio
Clark, Noel A.
Bellini, Tommaso
author_facet Fraccia, Tommaso P.
Smith, Gregory P.
Zanchetta, Giuliano
Paraboschi, Elvezia
Yi, Yougwooo
Walba, David M.
Dieci, Giorgio
Clark, Noel A.
Bellini, Tommaso
author_sort Fraccia, Tommaso P.
collection PubMed
description It has been observed that concentrated solutions of short DNA oligomers develop liquid crystal ordering as the result of a hierarchically structured supramolecular self-assembly. In mixtures of oligomers with various degree of complementarity, liquid crystal microdomains are formed via the selective aggregation of those oligomers that have a sufficient degree of duplexing and propensity for physical polymerization. Here we show that such domains act as fluid and permeable microreactors in which the order-stabilized molecular contacts between duplex terminals serve as physical templates for their chemical ligation. In the presence of abiotic condensing agents, liquid crystal ordering markedly enhances ligation efficacy, thereby enhancing its own phase stability. The coupling between order-templated ligation and selectivity provided by supramolecular ordering enables an autocatalytic cycle favouring the growth of DNA chains, up to biologically relevant lengths, from few-base long oligomers. This finding suggests a novel scenario for the abiotic origin of nucleic acids.
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spelling pubmed-43664932015-04-02 Abiotic ligation of DNA oligomers templated by their liquid crystal ordering Fraccia, Tommaso P. Smith, Gregory P. Zanchetta, Giuliano Paraboschi, Elvezia Yi, Yougwooo Walba, David M. Dieci, Giorgio Clark, Noel A. Bellini, Tommaso Nat Commun Article It has been observed that concentrated solutions of short DNA oligomers develop liquid crystal ordering as the result of a hierarchically structured supramolecular self-assembly. In mixtures of oligomers with various degree of complementarity, liquid crystal microdomains are formed via the selective aggregation of those oligomers that have a sufficient degree of duplexing and propensity for physical polymerization. Here we show that such domains act as fluid and permeable microreactors in which the order-stabilized molecular contacts between duplex terminals serve as physical templates for their chemical ligation. In the presence of abiotic condensing agents, liquid crystal ordering markedly enhances ligation efficacy, thereby enhancing its own phase stability. The coupling between order-templated ligation and selectivity provided by supramolecular ordering enables an autocatalytic cycle favouring the growth of DNA chains, up to biologically relevant lengths, from few-base long oligomers. This finding suggests a novel scenario for the abiotic origin of nucleic acids. Nature Pub. Group 2015-03-10 /pmc/articles/PMC4366493/ /pubmed/25752840 http://dx.doi.org/10.1038/ncomms7424 Text en Copyright © 2015, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. http://creativecommons.org/licenses/by-nc-sa/4.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/
spellingShingle Article
Fraccia, Tommaso P.
Smith, Gregory P.
Zanchetta, Giuliano
Paraboschi, Elvezia
Yi, Yougwooo
Walba, David M.
Dieci, Giorgio
Clark, Noel A.
Bellini, Tommaso
Abiotic ligation of DNA oligomers templated by their liquid crystal ordering
title Abiotic ligation of DNA oligomers templated by their liquid crystal ordering
title_full Abiotic ligation of DNA oligomers templated by their liquid crystal ordering
title_fullStr Abiotic ligation of DNA oligomers templated by their liquid crystal ordering
title_full_unstemmed Abiotic ligation of DNA oligomers templated by their liquid crystal ordering
title_short Abiotic ligation of DNA oligomers templated by their liquid crystal ordering
title_sort abiotic ligation of dna oligomers templated by their liquid crystal ordering
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4366493/
https://www.ncbi.nlm.nih.gov/pubmed/25752840
http://dx.doi.org/10.1038/ncomms7424
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