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Use of Multispectral Imaging in Varietal Identification of Tomato

Multispectral imaging is an emerging non-destructive technology. In this work its potential for varietal discrimination and identification of tomato cultivars of Nepal was investigated. Two sample sets were used for the study, one with two parents and their crosses and other with eleven cultivars to...

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Autores principales: Shrestha, Santosh, Deleuran, Lise Christina, Olesen, Merete Halkjær, Gislum, René
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4367422/
https://www.ncbi.nlm.nih.gov/pubmed/25690549
http://dx.doi.org/10.3390/s150204496
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author Shrestha, Santosh
Deleuran, Lise Christina
Olesen, Merete Halkjær
Gislum, René
author_facet Shrestha, Santosh
Deleuran, Lise Christina
Olesen, Merete Halkjær
Gislum, René
author_sort Shrestha, Santosh
collection PubMed
description Multispectral imaging is an emerging non-destructive technology. In this work its potential for varietal discrimination and identification of tomato cultivars of Nepal was investigated. Two sample sets were used for the study, one with two parents and their crosses and other with eleven cultivars to study parents and offspring relationship and varietal identification respectively. Normalized canonical discriminant analysis (nCDA) and principal component analysis (PCA) were used to analyze and compare the results for parents and offspring study. Both the results showed clear discrimination of parents and offspring. nCDA was also used for pairwise discrimination of the eleven cultivars, which correctly discriminated upto 100% and only few pairs below 85%. Partial least square discriminant analysis (PLS-DA) was further used to classify all the cultivars. The model displayed an overall classification accuracy of 82%, which was further improved to 96% and 86% with stepwise PLS-DA models on high (seven) and poor (four) sensitivity cultivars, respectively. The stepwise PLS-DA models had satisfactory classification errors for cross-validation and prediction 7% and 7%, respectively. The results obtained provide an opportunity of using multispectral imaging technology as a primary tool in a scientific community for identification/discrimination of plant varieties in regard to genetic purity and plant variety protection/registration.
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spelling pubmed-43674222015-04-30 Use of Multispectral Imaging in Varietal Identification of Tomato Shrestha, Santosh Deleuran, Lise Christina Olesen, Merete Halkjær Gislum, René Sensors (Basel) Article Multispectral imaging is an emerging non-destructive technology. In this work its potential for varietal discrimination and identification of tomato cultivars of Nepal was investigated. Two sample sets were used for the study, one with two parents and their crosses and other with eleven cultivars to study parents and offspring relationship and varietal identification respectively. Normalized canonical discriminant analysis (nCDA) and principal component analysis (PCA) were used to analyze and compare the results for parents and offspring study. Both the results showed clear discrimination of parents and offspring. nCDA was also used for pairwise discrimination of the eleven cultivars, which correctly discriminated upto 100% and only few pairs below 85%. Partial least square discriminant analysis (PLS-DA) was further used to classify all the cultivars. The model displayed an overall classification accuracy of 82%, which was further improved to 96% and 86% with stepwise PLS-DA models on high (seven) and poor (four) sensitivity cultivars, respectively. The stepwise PLS-DA models had satisfactory classification errors for cross-validation and prediction 7% and 7%, respectively. The results obtained provide an opportunity of using multispectral imaging technology as a primary tool in a scientific community for identification/discrimination of plant varieties in regard to genetic purity and plant variety protection/registration. MDPI 2015-02-16 /pmc/articles/PMC4367422/ /pubmed/25690549 http://dx.doi.org/10.3390/s150204496 Text en © 2015 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Shrestha, Santosh
Deleuran, Lise Christina
Olesen, Merete Halkjær
Gislum, René
Use of Multispectral Imaging in Varietal Identification of Tomato
title Use of Multispectral Imaging in Varietal Identification of Tomato
title_full Use of Multispectral Imaging in Varietal Identification of Tomato
title_fullStr Use of Multispectral Imaging in Varietal Identification of Tomato
title_full_unstemmed Use of Multispectral Imaging in Varietal Identification of Tomato
title_short Use of Multispectral Imaging in Varietal Identification of Tomato
title_sort use of multispectral imaging in varietal identification of tomato
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4367422/
https://www.ncbi.nlm.nih.gov/pubmed/25690549
http://dx.doi.org/10.3390/s150204496
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