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Genetic Diversity of Grasspea and Its Relative Species Revealed by SSR Markers
The study of genetic diversity between Lathyrus sativus L. and its relative species may yield fundamental insights into evolutionary history and provide options to meet the challenge of climate changes. 30 SSR loci were employed to assess the genetic diversity and population structure of 283 individ...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4368647/ https://www.ncbi.nlm.nih.gov/pubmed/25793712 http://dx.doi.org/10.1371/journal.pone.0118542 |
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author | Wang, Fang Yang, Tao Burlyaeva, Marina Li, Ling Jiang, Junye Fang, Li Redden, Robert Zong, Xuxiao |
author_facet | Wang, Fang Yang, Tao Burlyaeva, Marina Li, Ling Jiang, Junye Fang, Li Redden, Robert Zong, Xuxiao |
author_sort | Wang, Fang |
collection | PubMed |
description | The study of genetic diversity between Lathyrus sativus L. and its relative species may yield fundamental insights into evolutionary history and provide options to meet the challenge of climate changes. 30 SSR loci were employed to assess the genetic diversity and population structure of 283 individuals from wild and domesticated populations from Africa, Europe, Asia and ICARDA. The allele number per loci ranged from 3 to 14. The average gene diversity index and average polymorphism information content (PIC) was 0.5340 and 0.4817, respectively. A model based population structure analysis divided the germplasm resources into three subgroups: the relative species, the grasspea from Asia, and the grasspea from Europe and Africa. The UPGMA dendrogram and PCA cluster also demonstrated that Asian group was convincingly separated from the other group. The AMOVA result showed that the cultivated species was quite distinct from its relative species, however a low level of differentiation was revealed among their geographic origins. In all, these results provided a molecular basis for understanding genetic diversity of L. sativus and its relatives. |
format | Online Article Text |
id | pubmed-4368647 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-43686472015-03-27 Genetic Diversity of Grasspea and Its Relative Species Revealed by SSR Markers Wang, Fang Yang, Tao Burlyaeva, Marina Li, Ling Jiang, Junye Fang, Li Redden, Robert Zong, Xuxiao PLoS One Research Article The study of genetic diversity between Lathyrus sativus L. and its relative species may yield fundamental insights into evolutionary history and provide options to meet the challenge of climate changes. 30 SSR loci were employed to assess the genetic diversity and population structure of 283 individuals from wild and domesticated populations from Africa, Europe, Asia and ICARDA. The allele number per loci ranged from 3 to 14. The average gene diversity index and average polymorphism information content (PIC) was 0.5340 and 0.4817, respectively. A model based population structure analysis divided the germplasm resources into three subgroups: the relative species, the grasspea from Asia, and the grasspea from Europe and Africa. The UPGMA dendrogram and PCA cluster also demonstrated that Asian group was convincingly separated from the other group. The AMOVA result showed that the cultivated species was quite distinct from its relative species, however a low level of differentiation was revealed among their geographic origins. In all, these results provided a molecular basis for understanding genetic diversity of L. sativus and its relatives. Public Library of Science 2015-03-20 /pmc/articles/PMC4368647/ /pubmed/25793712 http://dx.doi.org/10.1371/journal.pone.0118542 Text en © 2015 Wang et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Wang, Fang Yang, Tao Burlyaeva, Marina Li, Ling Jiang, Junye Fang, Li Redden, Robert Zong, Xuxiao Genetic Diversity of Grasspea and Its Relative Species Revealed by SSR Markers |
title | Genetic Diversity of Grasspea and Its Relative Species Revealed by SSR Markers |
title_full | Genetic Diversity of Grasspea and Its Relative Species Revealed by SSR Markers |
title_fullStr | Genetic Diversity of Grasspea and Its Relative Species Revealed by SSR Markers |
title_full_unstemmed | Genetic Diversity of Grasspea and Its Relative Species Revealed by SSR Markers |
title_short | Genetic Diversity of Grasspea and Its Relative Species Revealed by SSR Markers |
title_sort | genetic diversity of grasspea and its relative species revealed by ssr markers |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4368647/ https://www.ncbi.nlm.nih.gov/pubmed/25793712 http://dx.doi.org/10.1371/journal.pone.0118542 |
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