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In silico pharmacokinetic and molecular docking studies of small molecules derived from Indigofera aspalathoides Vahl targeting receptor tyrosine kinases

Angiogenesis is the formation of new blood vessels from preexisting vascular network that plays an important role in the tumor growth, invasion and metastasis. Anti-angiogenesis targeting tyrosine kinases such as vascular endothelial growth factor receptor 2 (VEGFR2) and platelet derived growth fact...

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Autores principales: Paramashivam, Sathish Kumar, Elayaperumal, Kalaivani, Natarajan, Boopala bhagavan, Ramamoorthy, Manjula devi, Balasubramanian, Suganthana, Dhiraviam, Kannan Narayanan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4369682/
https://www.ncbi.nlm.nih.gov/pubmed/25848167
http://dx.doi.org/10.6026/97320630011073
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author Paramashivam, Sathish Kumar
Elayaperumal, Kalaivani
Natarajan, Boopala bhagavan
Ramamoorthy, Manjula devi
Balasubramanian, Suganthana
Dhiraviam, Kannan Narayanan
author_facet Paramashivam, Sathish Kumar
Elayaperumal, Kalaivani
Natarajan, Boopala bhagavan
Ramamoorthy, Manjula devi
Balasubramanian, Suganthana
Dhiraviam, Kannan Narayanan
author_sort Paramashivam, Sathish Kumar
collection PubMed
description Angiogenesis is the formation of new blood vessels from preexisting vascular network that plays an important role in the tumor growth, invasion and metastasis. Anti-angiogenesis targeting tyrosine kinases such as vascular endothelial growth factor receptor 2 (VEGFR2) and platelet derived growth factor receptor β (PDGFRβ) constitutes a successful target for the treatment of cancer. In this work, molecular docking studies of three bioflavanoid such as indigocarpan, mucronulatol, indigocarpan diacetate and two diterpenes namely erythroxydiol X and Y derived from Indigofera aspalathoides as PDGFRβ and VEGFR2 inhibitors were performed using computational tools. The crystal structures of two target proteins were retrieved from PDB website. Among the five compounds investigated, indigocarpan exhibited potent binding energy ΔG = -7.04 kcal/mol with VEGFR2 and ΔG = -4.82 with PDGFRβ compared to commercially available anti-angiogenic drug sorafenib (positive control). Our results strongly suggested that indigocarpan is a potent angiogenesis inhibitor as ascertained by its potential interaction with VEGFR2 and PDGFRβ. This hypothesis provides a better insight to control metastasis by blocking angiogenesis.
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spelling pubmed-43696822015-04-06 In silico pharmacokinetic and molecular docking studies of small molecules derived from Indigofera aspalathoides Vahl targeting receptor tyrosine kinases Paramashivam, Sathish Kumar Elayaperumal, Kalaivani Natarajan, Boopala bhagavan Ramamoorthy, Manjula devi Balasubramanian, Suganthana Dhiraviam, Kannan Narayanan Bioinformation Hypothesis Angiogenesis is the formation of new blood vessels from preexisting vascular network that plays an important role in the tumor growth, invasion and metastasis. Anti-angiogenesis targeting tyrosine kinases such as vascular endothelial growth factor receptor 2 (VEGFR2) and platelet derived growth factor receptor β (PDGFRβ) constitutes a successful target for the treatment of cancer. In this work, molecular docking studies of three bioflavanoid such as indigocarpan, mucronulatol, indigocarpan diacetate and two diterpenes namely erythroxydiol X and Y derived from Indigofera aspalathoides as PDGFRβ and VEGFR2 inhibitors were performed using computational tools. The crystal structures of two target proteins were retrieved from PDB website. Among the five compounds investigated, indigocarpan exhibited potent binding energy ΔG = -7.04 kcal/mol with VEGFR2 and ΔG = -4.82 with PDGFRβ compared to commercially available anti-angiogenic drug sorafenib (positive control). Our results strongly suggested that indigocarpan is a potent angiogenesis inhibitor as ascertained by its potential interaction with VEGFR2 and PDGFRβ. This hypothesis provides a better insight to control metastasis by blocking angiogenesis. Biomedical Informatics 2015-02-28 /pmc/articles/PMC4369682/ /pubmed/25848167 http://dx.doi.org/10.6026/97320630011073 Text en © 2015 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Hypothesis
Paramashivam, Sathish Kumar
Elayaperumal, Kalaivani
Natarajan, Boopala bhagavan
Ramamoorthy, Manjula devi
Balasubramanian, Suganthana
Dhiraviam, Kannan Narayanan
In silico pharmacokinetic and molecular docking studies of small molecules derived from Indigofera aspalathoides Vahl targeting receptor tyrosine kinases
title In silico pharmacokinetic and molecular docking studies of small molecules derived from Indigofera aspalathoides Vahl targeting receptor tyrosine kinases
title_full In silico pharmacokinetic and molecular docking studies of small molecules derived from Indigofera aspalathoides Vahl targeting receptor tyrosine kinases
title_fullStr In silico pharmacokinetic and molecular docking studies of small molecules derived from Indigofera aspalathoides Vahl targeting receptor tyrosine kinases
title_full_unstemmed In silico pharmacokinetic and molecular docking studies of small molecules derived from Indigofera aspalathoides Vahl targeting receptor tyrosine kinases
title_short In silico pharmacokinetic and molecular docking studies of small molecules derived from Indigofera aspalathoides Vahl targeting receptor tyrosine kinases
title_sort in silico pharmacokinetic and molecular docking studies of small molecules derived from indigofera aspalathoides vahl targeting receptor tyrosine kinases
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4369682/
https://www.ncbi.nlm.nih.gov/pubmed/25848167
http://dx.doi.org/10.6026/97320630011073
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