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From the Field to the Lab: Best Practices for Field Preservation of Bat Specimens for Molecular Analyses

Studies in molecular ecology depend on field-collected samples for genetic information, and the tissue sampled and preservation conditions strongly affect the quality of the DNA obtained. DNA yields from different tissue types have seldom been compared, and the relative performance of storage media...

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Autores principales: Corthals, Angelique, Martin, Alynn, Warsi, Omar M., Woller-Skar, Megan, Lancaster, Winston, Russell, Amy, Dávalos, Liliana M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4370412/
https://www.ncbi.nlm.nih.gov/pubmed/25798819
http://dx.doi.org/10.1371/journal.pone.0118994
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author Corthals, Angelique
Martin, Alynn
Warsi, Omar M.
Woller-Skar, Megan
Lancaster, Winston
Russell, Amy
Dávalos, Liliana M.
author_facet Corthals, Angelique
Martin, Alynn
Warsi, Omar M.
Woller-Skar, Megan
Lancaster, Winston
Russell, Amy
Dávalos, Liliana M.
author_sort Corthals, Angelique
collection PubMed
description Studies in molecular ecology depend on field-collected samples for genetic information, and the tissue sampled and preservation conditions strongly affect the quality of the DNA obtained. DNA yields from different tissue types have seldom been compared, and the relative performance of storage media has never been directly tested, even though these media may influence DNA degradation under field conditions. We analyzed DNA yield from buccal swabs and wing punches harvested from live bats using nucleic acid quantification as well as quantitative PCR for a single-copy nuclear locus. We also compared DNA yields from wing tissue preserved in three media: ethanol, NaCl-saturated dimethyl sulfoxide (DMSO), and silica desiccant. Wing punches yielded more total DNA than did buccal swabs, and wing tissues preserved in silica beads yielded significantly more total and nuclear DNA than those preserved in DMSO or ethanol. These results show that tissue type and preservation media strongly influence the quantity of DNA obtained from non-lethal genetic samples, and based on these effects we provide recommendations for field collection of tissues for genetic analyses.
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spelling pubmed-43704122015-04-04 From the Field to the Lab: Best Practices for Field Preservation of Bat Specimens for Molecular Analyses Corthals, Angelique Martin, Alynn Warsi, Omar M. Woller-Skar, Megan Lancaster, Winston Russell, Amy Dávalos, Liliana M. PLoS One Research Article Studies in molecular ecology depend on field-collected samples for genetic information, and the tissue sampled and preservation conditions strongly affect the quality of the DNA obtained. DNA yields from different tissue types have seldom been compared, and the relative performance of storage media has never been directly tested, even though these media may influence DNA degradation under field conditions. We analyzed DNA yield from buccal swabs and wing punches harvested from live bats using nucleic acid quantification as well as quantitative PCR for a single-copy nuclear locus. We also compared DNA yields from wing tissue preserved in three media: ethanol, NaCl-saturated dimethyl sulfoxide (DMSO), and silica desiccant. Wing punches yielded more total DNA than did buccal swabs, and wing tissues preserved in silica beads yielded significantly more total and nuclear DNA than those preserved in DMSO or ethanol. These results show that tissue type and preservation media strongly influence the quantity of DNA obtained from non-lethal genetic samples, and based on these effects we provide recommendations for field collection of tissues for genetic analyses. Public Library of Science 2015-03-23 /pmc/articles/PMC4370412/ /pubmed/25798819 http://dx.doi.org/10.1371/journal.pone.0118994 Text en © 2015 Corthals et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Corthals, Angelique
Martin, Alynn
Warsi, Omar M.
Woller-Skar, Megan
Lancaster, Winston
Russell, Amy
Dávalos, Liliana M.
From the Field to the Lab: Best Practices for Field Preservation of Bat Specimens for Molecular Analyses
title From the Field to the Lab: Best Practices for Field Preservation of Bat Specimens for Molecular Analyses
title_full From the Field to the Lab: Best Practices for Field Preservation of Bat Specimens for Molecular Analyses
title_fullStr From the Field to the Lab: Best Practices for Field Preservation of Bat Specimens for Molecular Analyses
title_full_unstemmed From the Field to the Lab: Best Practices for Field Preservation of Bat Specimens for Molecular Analyses
title_short From the Field to the Lab: Best Practices for Field Preservation of Bat Specimens for Molecular Analyses
title_sort from the field to the lab: best practices for field preservation of bat specimens for molecular analyses
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4370412/
https://www.ncbi.nlm.nih.gov/pubmed/25798819
http://dx.doi.org/10.1371/journal.pone.0118994
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