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Evolution of Bow-Tie Architectures in Biology

Bow-tie or hourglass structure is a common architectural feature found in many biological systems. A bow-tie in a multi-layered structure occurs when intermediate layers have much fewer components than the input and output layers. Examples include metabolism where a handful of building blocks mediat...

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Autores principales: Friedlander, Tamar, Mayo, Avraham E., Tlusty, Tsvi, Alon, Uri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4370773/
https://www.ncbi.nlm.nih.gov/pubmed/25798588
http://dx.doi.org/10.1371/journal.pcbi.1004055
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author Friedlander, Tamar
Mayo, Avraham E.
Tlusty, Tsvi
Alon, Uri
author_facet Friedlander, Tamar
Mayo, Avraham E.
Tlusty, Tsvi
Alon, Uri
author_sort Friedlander, Tamar
collection PubMed
description Bow-tie or hourglass structure is a common architectural feature found in many biological systems. A bow-tie in a multi-layered structure occurs when intermediate layers have much fewer components than the input and output layers. Examples include metabolism where a handful of building blocks mediate between multiple input nutrients and multiple output biomass components, and signaling networks where information from numerous receptor types passes through a small set of signaling pathways to regulate multiple output genes. Little is known, however, about how bow-tie architectures evolve. Here, we address the evolution of bow-tie architectures using simulations of multi-layered systems evolving to fulfill a given input-output goal. We find that bow-ties spontaneously evolve when the information in the evolutionary goal can be compressed. Mathematically speaking, bow-ties evolve when the rank of the input-output matrix describing the evolutionary goal is deficient. The maximal compression possible (the rank of the goal) determines the size of the narrowest part of the network—that is the bow-tie. A further requirement is that a process is active to reduce the number of links in the network, such as product-rule mutations, otherwise a non-bow-tie solution is found in the evolutionary simulations. This offers a mechanism to understand a common architectural principle of biological systems, and a way to quantitate the effective rank of the goals under which they evolved.
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spelling pubmed-43707732015-04-04 Evolution of Bow-Tie Architectures in Biology Friedlander, Tamar Mayo, Avraham E. Tlusty, Tsvi Alon, Uri PLoS Comput Biol Research Article Bow-tie or hourglass structure is a common architectural feature found in many biological systems. A bow-tie in a multi-layered structure occurs when intermediate layers have much fewer components than the input and output layers. Examples include metabolism where a handful of building blocks mediate between multiple input nutrients and multiple output biomass components, and signaling networks where information from numerous receptor types passes through a small set of signaling pathways to regulate multiple output genes. Little is known, however, about how bow-tie architectures evolve. Here, we address the evolution of bow-tie architectures using simulations of multi-layered systems evolving to fulfill a given input-output goal. We find that bow-ties spontaneously evolve when the information in the evolutionary goal can be compressed. Mathematically speaking, bow-ties evolve when the rank of the input-output matrix describing the evolutionary goal is deficient. The maximal compression possible (the rank of the goal) determines the size of the narrowest part of the network—that is the bow-tie. A further requirement is that a process is active to reduce the number of links in the network, such as product-rule mutations, otherwise a non-bow-tie solution is found in the evolutionary simulations. This offers a mechanism to understand a common architectural principle of biological systems, and a way to quantitate the effective rank of the goals under which they evolved. Public Library of Science 2015-03-23 /pmc/articles/PMC4370773/ /pubmed/25798588 http://dx.doi.org/10.1371/journal.pcbi.1004055 Text en © 2015 Friedlander et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Friedlander, Tamar
Mayo, Avraham E.
Tlusty, Tsvi
Alon, Uri
Evolution of Bow-Tie Architectures in Biology
title Evolution of Bow-Tie Architectures in Biology
title_full Evolution of Bow-Tie Architectures in Biology
title_fullStr Evolution of Bow-Tie Architectures in Biology
title_full_unstemmed Evolution of Bow-Tie Architectures in Biology
title_short Evolution of Bow-Tie Architectures in Biology
title_sort evolution of bow-tie architectures in biology
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4370773/
https://www.ncbi.nlm.nih.gov/pubmed/25798588
http://dx.doi.org/10.1371/journal.pcbi.1004055
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