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Evolution of Bow-Tie Architectures in Biology
Bow-tie or hourglass structure is a common architectural feature found in many biological systems. A bow-tie in a multi-layered structure occurs when intermediate layers have much fewer components than the input and output layers. Examples include metabolism where a handful of building blocks mediat...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4370773/ https://www.ncbi.nlm.nih.gov/pubmed/25798588 http://dx.doi.org/10.1371/journal.pcbi.1004055 |
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author | Friedlander, Tamar Mayo, Avraham E. Tlusty, Tsvi Alon, Uri |
author_facet | Friedlander, Tamar Mayo, Avraham E. Tlusty, Tsvi Alon, Uri |
author_sort | Friedlander, Tamar |
collection | PubMed |
description | Bow-tie or hourglass structure is a common architectural feature found in many biological systems. A bow-tie in a multi-layered structure occurs when intermediate layers have much fewer components than the input and output layers. Examples include metabolism where a handful of building blocks mediate between multiple input nutrients and multiple output biomass components, and signaling networks where information from numerous receptor types passes through a small set of signaling pathways to regulate multiple output genes. Little is known, however, about how bow-tie architectures evolve. Here, we address the evolution of bow-tie architectures using simulations of multi-layered systems evolving to fulfill a given input-output goal. We find that bow-ties spontaneously evolve when the information in the evolutionary goal can be compressed. Mathematically speaking, bow-ties evolve when the rank of the input-output matrix describing the evolutionary goal is deficient. The maximal compression possible (the rank of the goal) determines the size of the narrowest part of the network—that is the bow-tie. A further requirement is that a process is active to reduce the number of links in the network, such as product-rule mutations, otherwise a non-bow-tie solution is found in the evolutionary simulations. This offers a mechanism to understand a common architectural principle of biological systems, and a way to quantitate the effective rank of the goals under which they evolved. |
format | Online Article Text |
id | pubmed-4370773 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-43707732015-04-04 Evolution of Bow-Tie Architectures in Biology Friedlander, Tamar Mayo, Avraham E. Tlusty, Tsvi Alon, Uri PLoS Comput Biol Research Article Bow-tie or hourglass structure is a common architectural feature found in many biological systems. A bow-tie in a multi-layered structure occurs when intermediate layers have much fewer components than the input and output layers. Examples include metabolism where a handful of building blocks mediate between multiple input nutrients and multiple output biomass components, and signaling networks where information from numerous receptor types passes through a small set of signaling pathways to regulate multiple output genes. Little is known, however, about how bow-tie architectures evolve. Here, we address the evolution of bow-tie architectures using simulations of multi-layered systems evolving to fulfill a given input-output goal. We find that bow-ties spontaneously evolve when the information in the evolutionary goal can be compressed. Mathematically speaking, bow-ties evolve when the rank of the input-output matrix describing the evolutionary goal is deficient. The maximal compression possible (the rank of the goal) determines the size of the narrowest part of the network—that is the bow-tie. A further requirement is that a process is active to reduce the number of links in the network, such as product-rule mutations, otherwise a non-bow-tie solution is found in the evolutionary simulations. This offers a mechanism to understand a common architectural principle of biological systems, and a way to quantitate the effective rank of the goals under which they evolved. Public Library of Science 2015-03-23 /pmc/articles/PMC4370773/ /pubmed/25798588 http://dx.doi.org/10.1371/journal.pcbi.1004055 Text en © 2015 Friedlander et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Friedlander, Tamar Mayo, Avraham E. Tlusty, Tsvi Alon, Uri Evolution of Bow-Tie Architectures in Biology |
title | Evolution of Bow-Tie Architectures in Biology |
title_full | Evolution of Bow-Tie Architectures in Biology |
title_fullStr | Evolution of Bow-Tie Architectures in Biology |
title_full_unstemmed | Evolution of Bow-Tie Architectures in Biology |
title_short | Evolution of Bow-Tie Architectures in Biology |
title_sort | evolution of bow-tie architectures in biology |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4370773/ https://www.ncbi.nlm.nih.gov/pubmed/25798588 http://dx.doi.org/10.1371/journal.pcbi.1004055 |
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