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Microbial abundance in surface ice on the Greenland Ice Sheet

Measuring microbial abundance in glacier ice and identifying its controls is essential for a better understanding and quantification of biogeochemical processes in glacial ecosystems. However, cell enumeration of glacier ice samples is challenging due to typically low cell numbers and the presence o...

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Autores principales: Stibal, Marek, Gözdereliler, Erkin, Cameron, Karen A., Box, Jason E., Stevens, Ian T., Gokul, Jarishma K., Schostag, Morten, Zarsky, Jakub D., Edwards, Arwyn, Irvine-Fynn, Tristram D. L., Jacobsen, Carsten S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4371753/
https://www.ncbi.nlm.nih.gov/pubmed/25852678
http://dx.doi.org/10.3389/fmicb.2015.00225
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author Stibal, Marek
Gözdereliler, Erkin
Cameron, Karen A.
Box, Jason E.
Stevens, Ian T.
Gokul, Jarishma K.
Schostag, Morten
Zarsky, Jakub D.
Edwards, Arwyn
Irvine-Fynn, Tristram D. L.
Jacobsen, Carsten S.
author_facet Stibal, Marek
Gözdereliler, Erkin
Cameron, Karen A.
Box, Jason E.
Stevens, Ian T.
Gokul, Jarishma K.
Schostag, Morten
Zarsky, Jakub D.
Edwards, Arwyn
Irvine-Fynn, Tristram D. L.
Jacobsen, Carsten S.
author_sort Stibal, Marek
collection PubMed
description Measuring microbial abundance in glacier ice and identifying its controls is essential for a better understanding and quantification of biogeochemical processes in glacial ecosystems. However, cell enumeration of glacier ice samples is challenging due to typically low cell numbers and the presence of interfering mineral particles. We quantified for the first time the abundance of microbial cells in surface ice from geographically distinct sites on the Greenland Ice Sheet (GrIS), using three enumeration methods: epifluorescence microscopy (EFM), flow cytometry (FCM), and quantitative polymerase chain reaction (qPCR). In addition, we reviewed published data on microbial abundance in glacier ice and tested the three methods on artificial ice samples of realistic cell (10(2)–10(7) cells ml(−1)) and mineral particle (0.1–100 mg ml(−1)) concentrations, simulating a range of glacial ice types, from clean subsurface ice to surface ice to sediment-laden basal ice. We then used multivariate statistical analysis to identify factors responsible for the variation in microbial abundance on the ice sheet. EFM gave the most accurate and reproducible results of the tested methodologies, and was therefore selected as the most suitable technique for cell enumeration of ice containing dust. Cell numbers in surface ice samples, determined by EFM, ranged from ~ 2 × 10(3) to ~ 2 × 10(6) cells ml(−1) while dust concentrations ranged from 0.01 to 2 mg ml(−1). The lowest abundances were found in ice sampled from the accumulation area of the ice sheet and in samples affected by fresh snow; these samples may be considered as a reference point of the cell abundance of precipitants that are deposited on the ice sheet surface. Dust content was the most significant variable to explain the variation in the abundance data, which suggests a direct association between deposited dust particles and cells and/or by their provision of limited nutrients to microbial communities on the GrIS.
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spelling pubmed-43717532015-04-07 Microbial abundance in surface ice on the Greenland Ice Sheet Stibal, Marek Gözdereliler, Erkin Cameron, Karen A. Box, Jason E. Stevens, Ian T. Gokul, Jarishma K. Schostag, Morten Zarsky, Jakub D. Edwards, Arwyn Irvine-Fynn, Tristram D. L. Jacobsen, Carsten S. Front Microbiol Microbiology Measuring microbial abundance in glacier ice and identifying its controls is essential for a better understanding and quantification of biogeochemical processes in glacial ecosystems. However, cell enumeration of glacier ice samples is challenging due to typically low cell numbers and the presence of interfering mineral particles. We quantified for the first time the abundance of microbial cells in surface ice from geographically distinct sites on the Greenland Ice Sheet (GrIS), using three enumeration methods: epifluorescence microscopy (EFM), flow cytometry (FCM), and quantitative polymerase chain reaction (qPCR). In addition, we reviewed published data on microbial abundance in glacier ice and tested the three methods on artificial ice samples of realistic cell (10(2)–10(7) cells ml(−1)) and mineral particle (0.1–100 mg ml(−1)) concentrations, simulating a range of glacial ice types, from clean subsurface ice to surface ice to sediment-laden basal ice. We then used multivariate statistical analysis to identify factors responsible for the variation in microbial abundance on the ice sheet. EFM gave the most accurate and reproducible results of the tested methodologies, and was therefore selected as the most suitable technique for cell enumeration of ice containing dust. Cell numbers in surface ice samples, determined by EFM, ranged from ~ 2 × 10(3) to ~ 2 × 10(6) cells ml(−1) while dust concentrations ranged from 0.01 to 2 mg ml(−1). The lowest abundances were found in ice sampled from the accumulation area of the ice sheet and in samples affected by fresh snow; these samples may be considered as a reference point of the cell abundance of precipitants that are deposited on the ice sheet surface. Dust content was the most significant variable to explain the variation in the abundance data, which suggests a direct association between deposited dust particles and cells and/or by their provision of limited nutrients to microbial communities on the GrIS. Frontiers Media S.A. 2015-03-24 /pmc/articles/PMC4371753/ /pubmed/25852678 http://dx.doi.org/10.3389/fmicb.2015.00225 Text en Copyright © 2015 Stibal, Gözdereliler, Cameron, Box, Stevens, Gokul, Schostag, Zarsky, Edwards, Irvine-Fynn and Jacobsen. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Stibal, Marek
Gözdereliler, Erkin
Cameron, Karen A.
Box, Jason E.
Stevens, Ian T.
Gokul, Jarishma K.
Schostag, Morten
Zarsky, Jakub D.
Edwards, Arwyn
Irvine-Fynn, Tristram D. L.
Jacobsen, Carsten S.
Microbial abundance in surface ice on the Greenland Ice Sheet
title Microbial abundance in surface ice on the Greenland Ice Sheet
title_full Microbial abundance in surface ice on the Greenland Ice Sheet
title_fullStr Microbial abundance in surface ice on the Greenland Ice Sheet
title_full_unstemmed Microbial abundance in surface ice on the Greenland Ice Sheet
title_short Microbial abundance in surface ice on the Greenland Ice Sheet
title_sort microbial abundance in surface ice on the greenland ice sheet
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4371753/
https://www.ncbi.nlm.nih.gov/pubmed/25852678
http://dx.doi.org/10.3389/fmicb.2015.00225
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