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The Source of the River as a Nursery for Microbial Diversity

Bacteria are highly diverse and ubiquitous organisms that play a key role as drivers for ecosystem processes. The application of NGS (next-generation sequencing technologies) for 16S analysis has been broadly used for understanding bacterioplankton composition and structure. Most of studies conducte...

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Detalles Bibliográficos
Autores principales: de Oliveira, Luiz Felipe Valter, Margis, Rogério
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4372583/
https://www.ncbi.nlm.nih.gov/pubmed/25803426
http://dx.doi.org/10.1371/journal.pone.0120608
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author de Oliveira, Luiz Felipe Valter
Margis, Rogério
author_facet de Oliveira, Luiz Felipe Valter
Margis, Rogério
author_sort de Oliveira, Luiz Felipe Valter
collection PubMed
description Bacteria are highly diverse and ubiquitous organisms that play a key role as drivers for ecosystem processes. The application of NGS (next-generation sequencing technologies) for 16S analysis has been broadly used for understanding bacterioplankton composition and structure. Most of studies conducted on aquatic ecosystems with 16S NGS have been in seawater and lakes. A few studies using NGS have been conducted in river environments and have suggested the presence of a bacterial seed-bank. We performed 16S highly variable V4 region high-throughput analysis in the Sinos River, which is located in one of most important Brazilian industrial centers. This region has several contrasts in its environmental characteristics, presenting a longitudinal gradient of eutrophication and making it a remarkable study site for observing the dynamics of bacterioplankton. We demonstrated consistent evidence for the existence of a bacterial seed-bank and its longitudinal persistence. Seasonal shifts reinforce the importance of the source of the river in maintaining the bacterial seed-bank that spreads throughout the river. Therefore, the preservation of the source of the river is important not only for hydrologic reasons but also to maintain the microbial composition and the ecological integrity of the river.
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spelling pubmed-43725832015-04-04 The Source of the River as a Nursery for Microbial Diversity de Oliveira, Luiz Felipe Valter Margis, Rogério PLoS One Research Article Bacteria are highly diverse and ubiquitous organisms that play a key role as drivers for ecosystem processes. The application of NGS (next-generation sequencing technologies) for 16S analysis has been broadly used for understanding bacterioplankton composition and structure. Most of studies conducted on aquatic ecosystems with 16S NGS have been in seawater and lakes. A few studies using NGS have been conducted in river environments and have suggested the presence of a bacterial seed-bank. We performed 16S highly variable V4 region high-throughput analysis in the Sinos River, which is located in one of most important Brazilian industrial centers. This region has several contrasts in its environmental characteristics, presenting a longitudinal gradient of eutrophication and making it a remarkable study site for observing the dynamics of bacterioplankton. We demonstrated consistent evidence for the existence of a bacterial seed-bank and its longitudinal persistence. Seasonal shifts reinforce the importance of the source of the river in maintaining the bacterial seed-bank that spreads throughout the river. Therefore, the preservation of the source of the river is important not only for hydrologic reasons but also to maintain the microbial composition and the ecological integrity of the river. Public Library of Science 2015-03-24 /pmc/articles/PMC4372583/ /pubmed/25803426 http://dx.doi.org/10.1371/journal.pone.0120608 Text en © 2015 de Oliveira, Margis http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
de Oliveira, Luiz Felipe Valter
Margis, Rogério
The Source of the River as a Nursery for Microbial Diversity
title The Source of the River as a Nursery for Microbial Diversity
title_full The Source of the River as a Nursery for Microbial Diversity
title_fullStr The Source of the River as a Nursery for Microbial Diversity
title_full_unstemmed The Source of the River as a Nursery for Microbial Diversity
title_short The Source of the River as a Nursery for Microbial Diversity
title_sort source of the river as a nursery for microbial diversity
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4372583/
https://www.ncbi.nlm.nih.gov/pubmed/25803426
http://dx.doi.org/10.1371/journal.pone.0120608
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