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16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1
Because algae have become more accepted as sources of human nutrition, phylogenetic analysis can help resolve the taxonomy of taxa that have not been well studied. This can help establish algal evolutionary relationships. Here, we compare Auxenochlorella protothecoides and 23 strains of Prototheca b...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BlackWell Publishing Ltd
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4373152/ https://www.ncbi.nlm.nih.gov/pubmed/25937672 http://dx.doi.org/10.1111/jpy.12209 |
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author | Ewing, Aren Brubaker, Shane Somanchi, Aravind Yu, Esther Rudenko, George Reyes, Nina Espina, Karen Grossman, Arthur Franklin, Scott |
author_facet | Ewing, Aren Brubaker, Shane Somanchi, Aravind Yu, Esther Rudenko, George Reyes, Nina Espina, Karen Grossman, Arthur Franklin, Scott |
author_sort | Ewing, Aren |
collection | PubMed |
description | Because algae have become more accepted as sources of human nutrition, phylogenetic analysis can help resolve the taxonomy of taxa that have not been well studied. This can help establish algal evolutionary relationships. Here, we compare Auxenochlorella protothecoides and 23 strains of Prototheca based on their complete 16S and partial 23S plastid rDNA sequences along with nutrient utilization (auxanographic) profiles. These data demonstrate that some of the species groupings are not in agreement with the molecular phylogenetic analyses and that auxanographic profiles are poor predictors of phylogenetic relationships. |
format | Online Article Text |
id | pubmed-4373152 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | BlackWell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-43731522015-04-29 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1 Ewing, Aren Brubaker, Shane Somanchi, Aravind Yu, Esther Rudenko, George Reyes, Nina Espina, Karen Grossman, Arthur Franklin, Scott J Phycol Notes Because algae have become more accepted as sources of human nutrition, phylogenetic analysis can help resolve the taxonomy of taxa that have not been well studied. This can help establish algal evolutionary relationships. Here, we compare Auxenochlorella protothecoides and 23 strains of Prototheca based on their complete 16S and partial 23S plastid rDNA sequences along with nutrient utilization (auxanographic) profiles. These data demonstrate that some of the species groupings are not in agreement with the molecular phylogenetic analyses and that auxanographic profiles are poor predictors of phylogenetic relationships. BlackWell Publishing Ltd 2014-08 2014-07-10 /pmc/articles/PMC4373152/ /pubmed/25937672 http://dx.doi.org/10.1111/jpy.12209 Text en © 2014 The Authors. Journal of Phycology published by Wiley Periodicals, Inc. on behalf of Phycological Society of America. http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Notes Ewing, Aren Brubaker, Shane Somanchi, Aravind Yu, Esther Rudenko, George Reyes, Nina Espina, Karen Grossman, Arthur Franklin, Scott 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1 |
title | 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1 |
title_full | 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1 |
title_fullStr | 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1 |
title_full_unstemmed | 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1 |
title_short | 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1 |
title_sort | 16s and 23s plastid rdna phylogenies of prototheca species and their auxanographic phenotypes1 |
topic | Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4373152/ https://www.ncbi.nlm.nih.gov/pubmed/25937672 http://dx.doi.org/10.1111/jpy.12209 |
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