16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1

Because algae have become more accepted as sources of human nutrition, phylogenetic analysis can help resolve the taxonomy of taxa that have not been well studied. This can help establish algal evolutionary relationships. Here, we compare Auxenochlorella protothecoides and 23 strains of Prototheca b...

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Autores principales: Ewing, Aren, Brubaker, Shane, Somanchi, Aravind, Yu, Esther, Rudenko, George, Reyes, Nina, Espina, Karen, Grossman, Arthur, Franklin, Scott
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BlackWell Publishing Ltd 2014
Materias:
Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4373152/
https://www.ncbi.nlm.nih.gov/pubmed/25937672
http://dx.doi.org/10.1111/jpy.12209
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author Ewing, Aren
Brubaker, Shane
Somanchi, Aravind
Yu, Esther
Rudenko, George
Reyes, Nina
Espina, Karen
Grossman, Arthur
Franklin, Scott
author_facet Ewing, Aren
Brubaker, Shane
Somanchi, Aravind
Yu, Esther
Rudenko, George
Reyes, Nina
Espina, Karen
Grossman, Arthur
Franklin, Scott
author_sort Ewing, Aren
collection PubMed
description Because algae have become more accepted as sources of human nutrition, phylogenetic analysis can help resolve the taxonomy of taxa that have not been well studied. This can help establish algal evolutionary relationships. Here, we compare Auxenochlorella protothecoides and 23 strains of Prototheca based on their complete 16S and partial 23S plastid rDNA sequences along with nutrient utilization (auxanographic) profiles. These data demonstrate that some of the species groupings are not in agreement with the molecular phylogenetic analyses and that auxanographic profiles are poor predictors of phylogenetic relationships.
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spelling pubmed-43731522015-04-29 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1 Ewing, Aren Brubaker, Shane Somanchi, Aravind Yu, Esther Rudenko, George Reyes, Nina Espina, Karen Grossman, Arthur Franklin, Scott J Phycol Notes Because algae have become more accepted as sources of human nutrition, phylogenetic analysis can help resolve the taxonomy of taxa that have not been well studied. This can help establish algal evolutionary relationships. Here, we compare Auxenochlorella protothecoides and 23 strains of Prototheca based on their complete 16S and partial 23S plastid rDNA sequences along with nutrient utilization (auxanographic) profiles. These data demonstrate that some of the species groupings are not in agreement with the molecular phylogenetic analyses and that auxanographic profiles are poor predictors of phylogenetic relationships. BlackWell Publishing Ltd 2014-08 2014-07-10 /pmc/articles/PMC4373152/ /pubmed/25937672 http://dx.doi.org/10.1111/jpy.12209 Text en © 2014 The Authors. Journal of Phycology published by Wiley Periodicals, Inc. on behalf of Phycological Society of America. http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Notes
Ewing, Aren
Brubaker, Shane
Somanchi, Aravind
Yu, Esther
Rudenko, George
Reyes, Nina
Espina, Karen
Grossman, Arthur
Franklin, Scott
16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1
title 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1
title_full 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1
title_fullStr 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1
title_full_unstemmed 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1
title_short 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes1
title_sort 16s and 23s plastid rdna phylogenies of prototheca species and their auxanographic phenotypes1
topic Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4373152/
https://www.ncbi.nlm.nih.gov/pubmed/25937672
http://dx.doi.org/10.1111/jpy.12209
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