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Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers
BACKGROUND: Individuals and groups who write systematic reviews and meta-analyses in evidence-based medicine regularly carry out literature searches across multiple search engines linked to different bibliographic databases, and thus have an urgent need for a suitable metasearch engine to save time...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4375844/ https://www.ncbi.nlm.nih.gov/pubmed/25825665 http://dx.doi.org/10.1186/2047-2501-2-1 |
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author | Smalheiser, Neil R Lin, Can Jia, Lifeng Jiang, Yu Cohen, Aaron M Yu, Clement Davis, John M Adams, Clive E McDonagh, Marian S Meng, Weiyi |
author_facet | Smalheiser, Neil R Lin, Can Jia, Lifeng Jiang, Yu Cohen, Aaron M Yu, Clement Davis, John M Adams, Clive E McDonagh, Marian S Meng, Weiyi |
author_sort | Smalheiser, Neil R |
collection | PubMed |
description | BACKGROUND: Individuals and groups who write systematic reviews and meta-analyses in evidence-based medicine regularly carry out literature searches across multiple search engines linked to different bibliographic databases, and thus have an urgent need for a suitable metasearch engine to save time spent on repeated searches and to remove duplicate publications from initial consideration. Unlike general users who generally carry out searches to find a few highly relevant (or highly recent) articles, systematic reviewers seek to obtain a comprehensive set of articles on a given topic, satisfying specific criteria. This creates special requirements and challenges for metasearch engine design and implementation. METHODS: We created a federated search tool that is connected to five databases: PubMed, EMBASE, CINAHL, PsycINFO, and the Cochrane Central Register of Controlled Trials. Retrieved bibliographic records were shown online; optionally, results could be de-duplicated and exported in both BibTex and XML format. RESULTS: The query interface was extensively modified in response to feedback from users within our team. Besides a general search track and one focused on human-related articles, we also added search tracks optimized to identify case reports and systematic reviews. Although users could modify preset search options, they were rarely if ever altered in practice. Up to several thousand retrieved records could be exported within a few minutes. De-duplication of records returned from multiple databases was carried out in a prioritized fashion that favored retaining citations returned from PubMed. CONCLUSIONS: Systematic reviewers are used to formulating complex queries using strategies and search tags that are specific for individual databases. Metta offers a different approach that may save substantial time but which requires modification of current search strategies and better indexing of randomized controlled trial articles. We envision Metta as one piece of a multi-tool pipeline that will assist systematic reviewers in retrieving, filtering and assessing publications. As such, Metta may find wide utility for anyone who is carrying out a comprehensive search of the biomedical literature. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/2047-2501-2-1) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4375844 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-43758442015-03-31 Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers Smalheiser, Neil R Lin, Can Jia, Lifeng Jiang, Yu Cohen, Aaron M Yu, Clement Davis, John M Adams, Clive E McDonagh, Marian S Meng, Weiyi Health Inf Sci Syst Research BACKGROUND: Individuals and groups who write systematic reviews and meta-analyses in evidence-based medicine regularly carry out literature searches across multiple search engines linked to different bibliographic databases, and thus have an urgent need for a suitable metasearch engine to save time spent on repeated searches and to remove duplicate publications from initial consideration. Unlike general users who generally carry out searches to find a few highly relevant (or highly recent) articles, systematic reviewers seek to obtain a comprehensive set of articles on a given topic, satisfying specific criteria. This creates special requirements and challenges for metasearch engine design and implementation. METHODS: We created a federated search tool that is connected to five databases: PubMed, EMBASE, CINAHL, PsycINFO, and the Cochrane Central Register of Controlled Trials. Retrieved bibliographic records were shown online; optionally, results could be de-duplicated and exported in both BibTex and XML format. RESULTS: The query interface was extensively modified in response to feedback from users within our team. Besides a general search track and one focused on human-related articles, we also added search tracks optimized to identify case reports and systematic reviews. Although users could modify preset search options, they were rarely if ever altered in practice. Up to several thousand retrieved records could be exported within a few minutes. De-duplication of records returned from multiple databases was carried out in a prioritized fashion that favored retaining citations returned from PubMed. CONCLUSIONS: Systematic reviewers are used to formulating complex queries using strategies and search tags that are specific for individual databases. Metta offers a different approach that may save substantial time but which requires modification of current search strategies and better indexing of randomized controlled trial articles. We envision Metta as one piece of a multi-tool pipeline that will assist systematic reviewers in retrieving, filtering and assessing publications. As such, Metta may find wide utility for anyone who is carrying out a comprehensive search of the biomedical literature. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/2047-2501-2-1) contains supplementary material, which is available to authorized users. BioMed Central 2014-01-10 /pmc/articles/PMC4375844/ /pubmed/25825665 http://dx.doi.org/10.1186/2047-2501-2-1 Text en © Smalheiser et al.; licensee BioMed Central Ltd. 2014 This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Smalheiser, Neil R Lin, Can Jia, Lifeng Jiang, Yu Cohen, Aaron M Yu, Clement Davis, John M Adams, Clive E McDonagh, Marian S Meng, Weiyi Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers |
title | Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers |
title_full | Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers |
title_fullStr | Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers |
title_full_unstemmed | Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers |
title_short | Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers |
title_sort | design and implementation of metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4375844/ https://www.ncbi.nlm.nih.gov/pubmed/25825665 http://dx.doi.org/10.1186/2047-2501-2-1 |
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