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Uncovering RNA binding proteins associated with age and gender during liver maturation

In the present study, we perform an association analysis focusing on the expression changes of 1344 RNA Binding proteins (RBPs) as a function of age and gender in human liver. We identify 88 and 45 RBPs to be significantly associated with age and gender respectively. Experimental verification of sev...

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Autores principales: Chaturvedi, Praneet, Neelamraju, Yaseswini, Arif, Waqar, Kalsotra, Auinash, Janga, Sarath Chandra
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4379467/
https://www.ncbi.nlm.nih.gov/pubmed/25824884
http://dx.doi.org/10.1038/srep09512
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author Chaturvedi, Praneet
Neelamraju, Yaseswini
Arif, Waqar
Kalsotra, Auinash
Janga, Sarath Chandra
author_facet Chaturvedi, Praneet
Neelamraju, Yaseswini
Arif, Waqar
Kalsotra, Auinash
Janga, Sarath Chandra
author_sort Chaturvedi, Praneet
collection PubMed
description In the present study, we perform an association analysis focusing on the expression changes of 1344 RNA Binding proteins (RBPs) as a function of age and gender in human liver. We identify 88 and 45 RBPs to be significantly associated with age and gender respectively. Experimental verification of several of the predicted associations in mice confirmed our findings. Our results suggest that a small fraction of the gender-associated RBPs (~40%) are expressed higher in males than females. Altogether, these observations show that several of these RBPs are important and conserved regulators in maintaining liver function. Further analysis of the protein interaction network of RBPs associated with age and gender based on the centrality measures like degree, betweenness and closeness revealed that several of these RBPs might be prominent players in aging liver and impart gender specific alterations in gene expression via the formation of protein complexes. Indeed, both age and gender-associated RBPs in liver were found to show significantly higher clustering coefficients and network centrality measures compared to non-associated RBPs. The compendium of RBPs and this study will help us gain insight into the role of post-transcriptional regulatory molecules in aging and gender specific expression of genes.
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spelling pubmed-43794672015-04-07 Uncovering RNA binding proteins associated with age and gender during liver maturation Chaturvedi, Praneet Neelamraju, Yaseswini Arif, Waqar Kalsotra, Auinash Janga, Sarath Chandra Sci Rep Article In the present study, we perform an association analysis focusing on the expression changes of 1344 RNA Binding proteins (RBPs) as a function of age and gender in human liver. We identify 88 and 45 RBPs to be significantly associated with age and gender respectively. Experimental verification of several of the predicted associations in mice confirmed our findings. Our results suggest that a small fraction of the gender-associated RBPs (~40%) are expressed higher in males than females. Altogether, these observations show that several of these RBPs are important and conserved regulators in maintaining liver function. Further analysis of the protein interaction network of RBPs associated with age and gender based on the centrality measures like degree, betweenness and closeness revealed that several of these RBPs might be prominent players in aging liver and impart gender specific alterations in gene expression via the formation of protein complexes. Indeed, both age and gender-associated RBPs in liver were found to show significantly higher clustering coefficients and network centrality measures compared to non-associated RBPs. The compendium of RBPs and this study will help us gain insight into the role of post-transcriptional regulatory molecules in aging and gender specific expression of genes. Nature Publishing Group 2015-03-31 /pmc/articles/PMC4379467/ /pubmed/25824884 http://dx.doi.org/10.1038/srep09512 Text en Copyright © 2015, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Chaturvedi, Praneet
Neelamraju, Yaseswini
Arif, Waqar
Kalsotra, Auinash
Janga, Sarath Chandra
Uncovering RNA binding proteins associated with age and gender during liver maturation
title Uncovering RNA binding proteins associated with age and gender during liver maturation
title_full Uncovering RNA binding proteins associated with age and gender during liver maturation
title_fullStr Uncovering RNA binding proteins associated with age and gender during liver maturation
title_full_unstemmed Uncovering RNA binding proteins associated with age and gender during liver maturation
title_short Uncovering RNA binding proteins associated with age and gender during liver maturation
title_sort uncovering rna binding proteins associated with age and gender during liver maturation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4379467/
https://www.ncbi.nlm.nih.gov/pubmed/25824884
http://dx.doi.org/10.1038/srep09512
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