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An optimised whole mount in situ hybridisation protocol for the mollusc Lymnaea stagnalis
BACKGROUND: The ability to visualise the expression of individual genes in situ is an invaluable tool for developmental and evolutionary biologists; it allows for the characterisation of gene function, gene regulation and through inter-specific comparisons, the evolutionary history of unique morphol...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4379745/ https://www.ncbi.nlm.nih.gov/pubmed/25879449 http://dx.doi.org/10.1186/s12861-015-0068-7 |
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author | Hohagen, Jennifer Herlitze, Ines Jackson, Daniel John |
author_facet | Hohagen, Jennifer Herlitze, Ines Jackson, Daniel John |
author_sort | Hohagen, Jennifer |
collection | PubMed |
description | BACKGROUND: The ability to visualise the expression of individual genes in situ is an invaluable tool for developmental and evolutionary biologists; it allows for the characterisation of gene function, gene regulation and through inter-specific comparisons, the evolutionary history of unique morphological features. For well-established model organisms (e.g., flies, worms, sea urchins) this technique has been optimised to an extent where it can be automated for high-throughput analyses. While the overall concept of in situ hybridisation is simple (hybridise a single-stranded, labelled nucleic acid probe complementary to a target of interest, and then detect the label immunologically using colorimetric or fluorescent methods), there are many parameters in the technique that can significantly affect the final result. Furthermore, due to variation in the biochemical and biophysical properties of different cells and tissues, an in situ technique optimised for one species is often not suitable for another, and often varies depending on the ontogenetic stage within a species. RESULTS: Using a variety of pre-hybridisation treatments we have identified a set of treatments that greatly increases both whole mount in situ hybridisation (WMISH) signal intensity and consistency while maintaining morphological integrity for early larval stages of Lymnaea stagnalis. These treatments function well for a set of genes with presumably significantly different levels of expression (beta tubulin, engrailed and COE) and for colorimetric as well as fluorescent WMISH. We also identify a tissue-specific background stain in the larval shell field of L. stagnalis and a treatment, which eliminates this signal. CONCLUSIONS: This method that we present here will be of value to investigators employing L. stagnalis as a model for a variety of research themes (e.g. evolutionary biology, developmental biology, neurobiology, ecotoxicology), and brings a valuable tool to a species in a much understudied clade of animals collectively known as the Spiralia. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12861-015-0068-7) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4379745 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-43797452015-04-01 An optimised whole mount in situ hybridisation protocol for the mollusc Lymnaea stagnalis Hohagen, Jennifer Herlitze, Ines Jackson, Daniel John BMC Dev Biol Methodology Article BACKGROUND: The ability to visualise the expression of individual genes in situ is an invaluable tool for developmental and evolutionary biologists; it allows for the characterisation of gene function, gene regulation and through inter-specific comparisons, the evolutionary history of unique morphological features. For well-established model organisms (e.g., flies, worms, sea urchins) this technique has been optimised to an extent where it can be automated for high-throughput analyses. While the overall concept of in situ hybridisation is simple (hybridise a single-stranded, labelled nucleic acid probe complementary to a target of interest, and then detect the label immunologically using colorimetric or fluorescent methods), there are many parameters in the technique that can significantly affect the final result. Furthermore, due to variation in the biochemical and biophysical properties of different cells and tissues, an in situ technique optimised for one species is often not suitable for another, and often varies depending on the ontogenetic stage within a species. RESULTS: Using a variety of pre-hybridisation treatments we have identified a set of treatments that greatly increases both whole mount in situ hybridisation (WMISH) signal intensity and consistency while maintaining morphological integrity for early larval stages of Lymnaea stagnalis. These treatments function well for a set of genes with presumably significantly different levels of expression (beta tubulin, engrailed and COE) and for colorimetric as well as fluorescent WMISH. We also identify a tissue-specific background stain in the larval shell field of L. stagnalis and a treatment, which eliminates this signal. CONCLUSIONS: This method that we present here will be of value to investigators employing L. stagnalis as a model for a variety of research themes (e.g. evolutionary biology, developmental biology, neurobiology, ecotoxicology), and brings a valuable tool to a species in a much understudied clade of animals collectively known as the Spiralia. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12861-015-0068-7) contains supplementary material, which is available to authorized users. BioMed Central 2015-03-28 /pmc/articles/PMC4379745/ /pubmed/25879449 http://dx.doi.org/10.1186/s12861-015-0068-7 Text en © Hohagen et al.; licensee BioMed Central. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Methodology Article Hohagen, Jennifer Herlitze, Ines Jackson, Daniel John An optimised whole mount in situ hybridisation protocol for the mollusc Lymnaea stagnalis |
title | An optimised whole mount in situ hybridisation protocol for the mollusc Lymnaea stagnalis |
title_full | An optimised whole mount in situ hybridisation protocol for the mollusc Lymnaea stagnalis |
title_fullStr | An optimised whole mount in situ hybridisation protocol for the mollusc Lymnaea stagnalis |
title_full_unstemmed | An optimised whole mount in situ hybridisation protocol for the mollusc Lymnaea stagnalis |
title_short | An optimised whole mount in situ hybridisation protocol for the mollusc Lymnaea stagnalis |
title_sort | optimised whole mount in situ hybridisation protocol for the mollusc lymnaea stagnalis |
topic | Methodology Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4379745/ https://www.ncbi.nlm.nih.gov/pubmed/25879449 http://dx.doi.org/10.1186/s12861-015-0068-7 |
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