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Implications of Network Topology on Stability

In analogy to chemical reaction networks, I demonstrate the utility of expressing the governing equations of an arbitrary dynamical system (interaction network) as sums of real functions (generalized reactions) multiplied by real scalars (generalized stoichiometries) for analysis of its stability. T...

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Autor principal: Kinkhabwala, Ali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4380337/
https://www.ncbi.nlm.nih.gov/pubmed/25826219
http://dx.doi.org/10.1371/journal.pone.0122150
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author Kinkhabwala, Ali
author_facet Kinkhabwala, Ali
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description In analogy to chemical reaction networks, I demonstrate the utility of expressing the governing equations of an arbitrary dynamical system (interaction network) as sums of real functions (generalized reactions) multiplied by real scalars (generalized stoichiometries) for analysis of its stability. The reaction stoichiometries and first derivatives define the network’s “influence topology”, a signed directed bipartite graph. Parameter reduction of the influence topology permits simplified expression of the principal minors (sums of products of non-overlapping bipartite cycles) and Hurwitz determinants (sums of products of the principal minors or the bipartite cycles directly) for assessing the network’s steady state stability. Visualization of the Hurwitz determinants over the reduced parameters defines the network’s stability phase space, delimiting the range of its dynamics (specifically, the possible numbers of unstable roots at each steady state solution). Any further explicit algebraic specification of the network will project onto this stability phase space. Stability analysis via this hierarchical approach is demonstrated on classical networks from multiple fields.
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spelling pubmed-43803372015-04-09 Implications of Network Topology on Stability Kinkhabwala, Ali PLoS One Research Article In analogy to chemical reaction networks, I demonstrate the utility of expressing the governing equations of an arbitrary dynamical system (interaction network) as sums of real functions (generalized reactions) multiplied by real scalars (generalized stoichiometries) for analysis of its stability. The reaction stoichiometries and first derivatives define the network’s “influence topology”, a signed directed bipartite graph. Parameter reduction of the influence topology permits simplified expression of the principal minors (sums of products of non-overlapping bipartite cycles) and Hurwitz determinants (sums of products of the principal minors or the bipartite cycles directly) for assessing the network’s steady state stability. Visualization of the Hurwitz determinants over the reduced parameters defines the network’s stability phase space, delimiting the range of its dynamics (specifically, the possible numbers of unstable roots at each steady state solution). Any further explicit algebraic specification of the network will project onto this stability phase space. Stability analysis via this hierarchical approach is demonstrated on classical networks from multiple fields. Public Library of Science 2015-03-31 /pmc/articles/PMC4380337/ /pubmed/25826219 http://dx.doi.org/10.1371/journal.pone.0122150 Text en © 2015 Ali Kinkhabwala http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Kinkhabwala, Ali
Implications of Network Topology on Stability
title Implications of Network Topology on Stability
title_full Implications of Network Topology on Stability
title_fullStr Implications of Network Topology on Stability
title_full_unstemmed Implications of Network Topology on Stability
title_short Implications of Network Topology on Stability
title_sort implications of network topology on stability
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4380337/
https://www.ncbi.nlm.nih.gov/pubmed/25826219
http://dx.doi.org/10.1371/journal.pone.0122150
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