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A recent bottleneck of Y chromosome diversity coincides with a global change in culture
It is commonly thought that human genetic diversity in non-African populations was shaped primarily by an out-of-Africa dispersal 50–100 thousand yr ago (kya). Here, we present a study of 456 geographically diverse high-coverage Y chromosome sequences, including 299 newly reported samples. Applying...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Cold Spring Harbor Laboratory Press
2015
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4381518/ https://www.ncbi.nlm.nih.gov/pubmed/25770088 http://dx.doi.org/10.1101/gr.186684.114 |
| _version_ | 1782364467594526720 |
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| author | Karmin, Monika Saag, Lauri Vicente, Mário Sayres, Melissa A. Wilson Järve, Mari Talas, Ulvi Gerst Rootsi, Siiri Ilumäe, Anne-Mai Mägi, Reedik Mitt, Mario Pagani, Luca Puurand, Tarmo Faltyskova, Zuzana Clemente, Florian Cardona, Alexia Metspalu, Ene Sahakyan, Hovhannes Yunusbayev, Bayazit Hudjashov, Georgi DeGiorgio, Michael Loogväli, Eva-Liis Eichstaedt, Christina Eelmets, Mikk Chaubey, Gyaneshwer Tambets, Kristiina Litvinov, Sergei Mormina, Maru Xue, Yali Ayub, Qasim Zoraqi, Grigor Korneliussen, Thorfinn Sand Akhatova, Farida Lachance, Joseph Tishkoff, Sarah Momynaliev, Kuvat Ricaut, François-Xavier Kusuma, Pradiptajati Razafindrazaka, Harilanto Pierron, Denis Cox, Murray P. Sultana, Gazi Nurun Nahar Willerslev, Rane Muller, Craig Westaway, Michael Lambert, David Skaro, Vedrana Kovačevic´, Lejla Turdikulova, Shahlo Dalimova, Dilbar Khusainova, Rita Trofimova, Natalya Akhmetova, Vita Khidiyatova, Irina Lichman, Daria V. Isakova, Jainagul Pocheshkhova, Elvira Sabitov, Zhaxylyk Barashkov, Nikolay A. Nymadawa, Pagbajabyn Mihailov, Evelin Seng, Joseph Wee Tien Evseeva, Irina Migliano, Andrea Bamberg Abdullah, Syafiq Andriadze, George Primorac, Dragan Atramentova, Lubov Utevska, Olga Yepiskoposyan, Levon Marjanovic´, Damir Kushniarevich, Alena Behar, Doron M. Gilissen, Christian Vissers, Lisenka Veltman, Joris A. Balanovska, Elena Derenko, Miroslava Malyarchuk, Boris Metspalu, Andres Fedorova, Sardana Eriksson, Anders Manica, Andrea Mendez, Fernando L. Karafet, Tatiana M. Veeramah, Krishna R. Bradman, Neil Hammer, Michael F. Osipova, Ludmila P. Balanovsky, Oleg Khusnutdinova, Elza K. Johnsen, Knut Remm, Maido Thomas, Mark G. Tyler-Smith, Chris Underhill, Peter A. Willerslev, Eske Nielsen, Rasmus Metspalu, Mait Villems, Richard Kivisild, Toomas |
| author_facet | Karmin, Monika Saag, Lauri Vicente, Mário Sayres, Melissa A. Wilson Järve, Mari Talas, Ulvi Gerst Rootsi, Siiri Ilumäe, Anne-Mai Mägi, Reedik Mitt, Mario Pagani, Luca Puurand, Tarmo Faltyskova, Zuzana Clemente, Florian Cardona, Alexia Metspalu, Ene Sahakyan, Hovhannes Yunusbayev, Bayazit Hudjashov, Georgi DeGiorgio, Michael Loogväli, Eva-Liis Eichstaedt, Christina Eelmets, Mikk Chaubey, Gyaneshwer Tambets, Kristiina Litvinov, Sergei Mormina, Maru Xue, Yali Ayub, Qasim Zoraqi, Grigor Korneliussen, Thorfinn Sand Akhatova, Farida Lachance, Joseph Tishkoff, Sarah Momynaliev, Kuvat Ricaut, François-Xavier Kusuma, Pradiptajati Razafindrazaka, Harilanto Pierron, Denis Cox, Murray P. Sultana, Gazi Nurun Nahar Willerslev, Rane Muller, Craig Westaway, Michael Lambert, David Skaro, Vedrana Kovačevic´, Lejla Turdikulova, Shahlo Dalimova, Dilbar Khusainova, Rita Trofimova, Natalya Akhmetova, Vita Khidiyatova, Irina Lichman, Daria V. Isakova, Jainagul Pocheshkhova, Elvira Sabitov, Zhaxylyk Barashkov, Nikolay A. Nymadawa, Pagbajabyn Mihailov, Evelin Seng, Joseph Wee Tien Evseeva, Irina Migliano, Andrea Bamberg Abdullah, Syafiq Andriadze, George Primorac, Dragan Atramentova, Lubov Utevska, Olga Yepiskoposyan, Levon Marjanovic´, Damir Kushniarevich, Alena Behar, Doron M. Gilissen, Christian Vissers, Lisenka Veltman, Joris A. Balanovska, Elena Derenko, Miroslava Malyarchuk, Boris Metspalu, Andres Fedorova, Sardana Eriksson, Anders Manica, Andrea Mendez, Fernando L. Karafet, Tatiana M. Veeramah, Krishna R. Bradman, Neil Hammer, Michael F. Osipova, Ludmila P. Balanovsky, Oleg Khusnutdinova, Elza K. Johnsen, Knut Remm, Maido Thomas, Mark G. Tyler-Smith, Chris Underhill, Peter A. Willerslev, Eske Nielsen, Rasmus Metspalu, Mait Villems, Richard Kivisild, Toomas |
| author_sort | Karmin, Monika |
| collection | PubMed |
| description | It is commonly thought that human genetic diversity in non-African populations was shaped primarily by an out-of-Africa dispersal 50–100 thousand yr ago (kya). Here, we present a study of 456 geographically diverse high-coverage Y chromosome sequences, including 299 newly reported samples. Applying ancient DNA calibration, we date the Y-chromosomal most recent common ancestor (MRCA) in Africa at 254 (95% CI 192–307) kya and detect a cluster of major non-African founder haplogroups in a narrow time interval at 47–52 kya, consistent with a rapid initial colonization model of Eurasia and Oceania after the out-of-Africa bottleneck. In contrast to demographic reconstructions based on mtDNA, we infer a second strong bottleneck in Y-chromosome lineages dating to the last 10 ky. We hypothesize that this bottleneck is caused by cultural changes affecting variance of reproductive success among males. |
| format | Online Article Text |
| id | pubmed-4381518 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2015 |
| publisher | Cold Spring Harbor Laboratory Press |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-43815182015-10-01 A recent bottleneck of Y chromosome diversity coincides with a global change in culture Karmin, Monika Saag, Lauri Vicente, Mário Sayres, Melissa A. Wilson Järve, Mari Talas, Ulvi Gerst Rootsi, Siiri Ilumäe, Anne-Mai Mägi, Reedik Mitt, Mario Pagani, Luca Puurand, Tarmo Faltyskova, Zuzana Clemente, Florian Cardona, Alexia Metspalu, Ene Sahakyan, Hovhannes Yunusbayev, Bayazit Hudjashov, Georgi DeGiorgio, Michael Loogväli, Eva-Liis Eichstaedt, Christina Eelmets, Mikk Chaubey, Gyaneshwer Tambets, Kristiina Litvinov, Sergei Mormina, Maru Xue, Yali Ayub, Qasim Zoraqi, Grigor Korneliussen, Thorfinn Sand Akhatova, Farida Lachance, Joseph Tishkoff, Sarah Momynaliev, Kuvat Ricaut, François-Xavier Kusuma, Pradiptajati Razafindrazaka, Harilanto Pierron, Denis Cox, Murray P. Sultana, Gazi Nurun Nahar Willerslev, Rane Muller, Craig Westaway, Michael Lambert, David Skaro, Vedrana Kovačevic´, Lejla Turdikulova, Shahlo Dalimova, Dilbar Khusainova, Rita Trofimova, Natalya Akhmetova, Vita Khidiyatova, Irina Lichman, Daria V. Isakova, Jainagul Pocheshkhova, Elvira Sabitov, Zhaxylyk Barashkov, Nikolay A. Nymadawa, Pagbajabyn Mihailov, Evelin Seng, Joseph Wee Tien Evseeva, Irina Migliano, Andrea Bamberg Abdullah, Syafiq Andriadze, George Primorac, Dragan Atramentova, Lubov Utevska, Olga Yepiskoposyan, Levon Marjanovic´, Damir Kushniarevich, Alena Behar, Doron M. Gilissen, Christian Vissers, Lisenka Veltman, Joris A. Balanovska, Elena Derenko, Miroslava Malyarchuk, Boris Metspalu, Andres Fedorova, Sardana Eriksson, Anders Manica, Andrea Mendez, Fernando L. Karafet, Tatiana M. Veeramah, Krishna R. Bradman, Neil Hammer, Michael F. Osipova, Ludmila P. Balanovsky, Oleg Khusnutdinova, Elza K. Johnsen, Knut Remm, Maido Thomas, Mark G. Tyler-Smith, Chris Underhill, Peter A. Willerslev, Eske Nielsen, Rasmus Metspalu, Mait Villems, Richard Kivisild, Toomas Genome Res Research It is commonly thought that human genetic diversity in non-African populations was shaped primarily by an out-of-Africa dispersal 50–100 thousand yr ago (kya). Here, we present a study of 456 geographically diverse high-coverage Y chromosome sequences, including 299 newly reported samples. Applying ancient DNA calibration, we date the Y-chromosomal most recent common ancestor (MRCA) in Africa at 254 (95% CI 192–307) kya and detect a cluster of major non-African founder haplogroups in a narrow time interval at 47–52 kya, consistent with a rapid initial colonization model of Eurasia and Oceania after the out-of-Africa bottleneck. In contrast to demographic reconstructions based on mtDNA, we infer a second strong bottleneck in Y-chromosome lineages dating to the last 10 ky. We hypothesize that this bottleneck is caused by cultural changes affecting variance of reproductive success among males. Cold Spring Harbor Laboratory Press 2015-04 /pmc/articles/PMC4381518/ /pubmed/25770088 http://dx.doi.org/10.1101/gr.186684.114 Text en © 2015 Karmin et al.; Published by Cold Spring Harbor Laboratory Press http://creativecommons.org/licenses/by-nc/4.0/ This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see http://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/. |
| spellingShingle | Research Karmin, Monika Saag, Lauri Vicente, Mário Sayres, Melissa A. Wilson Järve, Mari Talas, Ulvi Gerst Rootsi, Siiri Ilumäe, Anne-Mai Mägi, Reedik Mitt, Mario Pagani, Luca Puurand, Tarmo Faltyskova, Zuzana Clemente, Florian Cardona, Alexia Metspalu, Ene Sahakyan, Hovhannes Yunusbayev, Bayazit Hudjashov, Georgi DeGiorgio, Michael Loogväli, Eva-Liis Eichstaedt, Christina Eelmets, Mikk Chaubey, Gyaneshwer Tambets, Kristiina Litvinov, Sergei Mormina, Maru Xue, Yali Ayub, Qasim Zoraqi, Grigor Korneliussen, Thorfinn Sand Akhatova, Farida Lachance, Joseph Tishkoff, Sarah Momynaliev, Kuvat Ricaut, François-Xavier Kusuma, Pradiptajati Razafindrazaka, Harilanto Pierron, Denis Cox, Murray P. Sultana, Gazi Nurun Nahar Willerslev, Rane Muller, Craig Westaway, Michael Lambert, David Skaro, Vedrana Kovačevic´, Lejla Turdikulova, Shahlo Dalimova, Dilbar Khusainova, Rita Trofimova, Natalya Akhmetova, Vita Khidiyatova, Irina Lichman, Daria V. Isakova, Jainagul Pocheshkhova, Elvira Sabitov, Zhaxylyk Barashkov, Nikolay A. Nymadawa, Pagbajabyn Mihailov, Evelin Seng, Joseph Wee Tien Evseeva, Irina Migliano, Andrea Bamberg Abdullah, Syafiq Andriadze, George Primorac, Dragan Atramentova, Lubov Utevska, Olga Yepiskoposyan, Levon Marjanovic´, Damir Kushniarevich, Alena Behar, Doron M. Gilissen, Christian Vissers, Lisenka Veltman, Joris A. Balanovska, Elena Derenko, Miroslava Malyarchuk, Boris Metspalu, Andres Fedorova, Sardana Eriksson, Anders Manica, Andrea Mendez, Fernando L. Karafet, Tatiana M. Veeramah, Krishna R. Bradman, Neil Hammer, Michael F. Osipova, Ludmila P. Balanovsky, Oleg Khusnutdinova, Elza K. Johnsen, Knut Remm, Maido Thomas, Mark G. Tyler-Smith, Chris Underhill, Peter A. Willerslev, Eske Nielsen, Rasmus Metspalu, Mait Villems, Richard Kivisild, Toomas A recent bottleneck of Y chromosome diversity coincides with a global change in culture |
| title | A recent bottleneck of Y chromosome diversity coincides with a global change in culture |
| title_full | A recent bottleneck of Y chromosome diversity coincides with a global change in culture |
| title_fullStr | A recent bottleneck of Y chromosome diversity coincides with a global change in culture |
| title_full_unstemmed | A recent bottleneck of Y chromosome diversity coincides with a global change in culture |
| title_short | A recent bottleneck of Y chromosome diversity coincides with a global change in culture |
| title_sort | recent bottleneck of y chromosome diversity coincides with a global change in culture |
| topic | Research |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4381518/ https://www.ncbi.nlm.nih.gov/pubmed/25770088 http://dx.doi.org/10.1101/gr.186684.114 |
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