Cargando…

SNP Identification from RNA Sequencing and Linkage Map Construction of Rubber Tree for Anchoring the Draft Genome

Hevea brasiliensis, or rubber tree, is an important crop species that accounts for the majority of natural latex production. The rubber tree nuclear genome consists of 18 chromosomes and is roughly 2.15 Gb. The current rubber tree reference genome assembly consists of 1,150,326 scaffolds ranging fro...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shearman, Jeremy R., Sangsrakru, Duangjai, Jomchai, Nukoon, Ruang-areerate, Panthita, Sonthirod, Chutima, Naktang, Chaiwat, Theerawattanasuk, Kanikar, Tragoonrung, Somvong, Tangphatsornruang, Sithichoke
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4382108/ https://www.ncbi.nlm.nih.gov/pubmed/25831195 http://dx.doi.org/10.1371/journal.pone.0121961

Ejemplares similares

Construction of a high-density integrated genetic linkage map of rubber tree (Hevea brasiliensis) using genotyping-by-sequencing (GBS)
por: Pootakham, Wirulda, et al.
Publicado: (2015)

Assembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript
por: Shearman, Jeremy R, et al.
Publicado: (2014)

Large-Scale SNP Discovery through RNA Sequencing and SNP Genotyping by Targeted Enrichment Sequencing in Cassava (Manihot esculenta Crantz)
por: Pootakham, Wirulda, et al.
Publicado: (2014)

De novo hybrid assembly of the rubber tree genome reveals evidence of paleotetraploidy in Hevea species
por: Pootakham, Wirulda, et al.
Publicado: (2017)

The two chromosomes of the mitochondrial genome of a sugarcane cultivar: assembly and recombination analysis using long PacBio reads
por: Shearman, Jeremy R., et al.
Publicado: (2016)

Effects of methylation-sensitive enzymes on the enrichment of genic SNPs and the degree of genome complexity reduction in a two-enzyme genotyping-by-sequencing (GBS) approach: a case study in oil palm (Elaeis guineensis)
por: Pootakham, Wirulda, et al.
Publicado: (2016)

Complete chloroplast genome sequences of five Bruguiera species (Rhizophoraceae): comparative analysis and phylogenetic relationships
por: Ruang-areerate, Panthita, et al.
Publicado: (2021)

Dynamics of coral‐associated microbiomes during a thermal bleaching event
por: Pootakham, Wirulda, et al.
Publicado: (2018)

A SNP variation in an expansin (EgExp4) gene affects height in oil palm
por: Somyong, Suthasinee, et al.
Publicado: (2022)

Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships
por: Yundaeng, Chutintorn, et al.
Publicado: (2020)

A draft chromosome-scale genome assembly of a commercial sugarcane
por: Shearman, Jeremy R., et al.
Publicado: (2022)

The complete mitochondrial genome of the Hipposideros pendleburyi (Pendlebury's leaf-nosed bat) an endemic species in Thailand
por: Kongkachana, Wasitthee, et al.
Publicado: (2021)

Assessment of the Genetic Diversity and Population Structure of Rhizophora apiculata Blume (Rhizophoraceae) in Thailand
por: Ruang-areerate, Panthita, et al.
Publicado: (2022)

Heat‐induced shift in coral microbiome reveals several members of the Rhodobacteraceae family as indicator species for thermal stress in Porites lutea
por: Pootakham, Wirulda, et al.
Publicado: (2019)

A Chromosome-Scale Genome Assembly of Mitragyna speciosa (Kratom) and the Assessment of Its Genetic Diversity in Thailand
por: Pootakham, Wirulda, et al.
Publicado: (2022)

Assembly of the durian chloroplast genome using long PacBio reads
por: Shearman, Jeremy R., et al.
Publicado: (2020)

De Novo Reference Assembly of the Upriver Orange Mangrove (Bruguiera sexangula) Genome
por: Pootakham, Wirulda, et al.
Publicado: (2022)

The complete mitochondrial genome of Luffa acutangula
por: Ruang-areerate, Panthita, et al.
Publicado: (2020)

Genome assemblies of Vigna reflexo-pilosa (créole bean) and its progenitors, Vigna hirtella and Vigna trinervia, revealed homoeolog expression bias and expression-level dominance in the allotetraploid
por: Pootakham, Wirulda, et al.
Publicado: (2023)

Transcriptome Sequencing of Hevea brasiliensis for Development of Microsatellite Markers and Construction of a Genetic Linkage Map
por: Triwitayakorn, Kanokporn, et al.
Publicado: (2011)

The complete mitochondrial genome sequence of the mountain crab Indochinamon bhumibol
por: Naktang, Chaiwat, et al.
Publicado: (2021)

Differential expression between drought-tolerant and drought-sensitive sugarcane under mild and moderate water stress as revealed by a comparative analysis of leaf transcriptome
por: Nawae, Wanapinun, et al.
Publicado: (2020)

Transcriptome analysis of oil palm inflorescences revealed candidate genes for an auxin signaling pathway involved in parthenocarpy
por: Somyong, Suthasinee, et al.
Publicado: (2018)

Feasibility of using 454 pyrosequencing for studying quasispecies of the whole dengue viral genome
por: Chin-inmanu, Kwanrutai, et al.
Publicado: (2012)

The complete chloroplast genome of Sonneratia griffithii Kurz (Lythraceae)
por: Sangsrakru, Duangjai, et al.
Publicado: (2022)

Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek)
por: Tangphatsornruang, Sithichoke, et al.
Publicado: (2009)

Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling
por: Juntawong, Piyada, et al.
Publicado: (2014)

High resolution profiling of coral-associated bacterial communities using full-length 16S rRNA sequence data from PacBio SMRT sequencing system
por: Pootakham, Wirulda, et al.
Publicado: (2017)

The complete chloroplast genome sequence and phylogenetic analysis of Heritiera fomes Buch.-Ham. (Malvales: Sterculiaceae)
por: Yoocha, Thippawan, et al.
Publicado: (2023)

The complete mitogenome of the Thai soldier crab Mictyris thailandensis Davie, Wisespongpand & Shih, 2013 (Crustacea: Decapoda: Mictyridae)
por: Sonthirod, Chutima, et al.
Publicado: (2022)

Comparative Analysis and Phylogenetic Relationships of Ceriops Species (Rhizophoraceae) and Avicennia lanata (Acanthaceae): Insight into the Chloroplast Genome Evolution between Middle and Seaward Zones of Mangrove Forests
por: Ruang-areerate, Panthita, et al.
Publicado: (2022)

The Chloroplast Genome Sequence of Mungbean (Vigna radiata) Determined by High-throughput Pyrosequencing: Structural Organization and Phylogenetic Relationships
por: Tangphatsornruang, S., et al.
Publicado: (2010)

A de novo reference assembly of the yellow mangrove Ceriops zippeliana genome
por: Pootakham, Wirulda, et al.
Publicado: (2022)

The Genome and Transcriptome Analysis of the Vigna mungo Chloroplast
por: Nawae, Wanapinun, et al.
Publicado: (2020)

Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing
por: Piriyapongsa, Jittima, et al.
Publicado: (2018)

SSR markers in transcripts of genes linked to post-transcriptional and transcriptional regulatory functions during vegetative and reproductive development of Elaeis guineensis
por: Tranbarger, Timothy John, et al.
Publicado: (2012)

The Fungus Metarhizium sp. BCC 4849 Is an Effective and Safe Mycoinsecticide for the Management of Spider Mites and Other Insect Pests
por: Wasuwan, Rudsamee, et al.
Publicado: (2021)

The complete chloroplast genome sequence of Intsia bijuga (Colebr.) Kuntze (Fabaceae: Detaroideae: Afzelieae)
por: U-thoomporn, Sonicha, et al.
Publicado: (2022)

Distance-based paper device using combined SYBR safe and gold nanoparticle probe LAMP assay to detect Leishmania among patients with HIV
por: Ruang-areerate, Toon, et al.
Publicado: (2022)

Microbial Ecology of Thailand Tsunami and Non-Tsunami Affected Terrestrials
por: Somboonna, Naraporn, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_um6gqog7c69quhc05f880d06bl