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Design, implementation and operation of a multimodality research imaging informatics repository

BACKGROUND: Biomedical imaging research increasingly involves acquiring, managing and processing large amounts of distributed imaging data. Integrated systems that combine data, meta-data and workflows are crucial for realising the opportunities presented by advances in imaging facilities. METHODS:...

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Detalles Bibliográficos
Autores principales: Nguyen, Toan D, Raniga, Parnesh, Barnes, David G, Egan, Gary F
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383058/
https://www.ncbi.nlm.nih.gov/pubmed/25870760
http://dx.doi.org/10.1186/2047-2501-3-S1-S6
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author Nguyen, Toan D
Raniga, Parnesh
Barnes, David G
Egan, Gary F
author_facet Nguyen, Toan D
Raniga, Parnesh
Barnes, David G
Egan, Gary F
author_sort Nguyen, Toan D
collection PubMed
description BACKGROUND: Biomedical imaging research increasingly involves acquiring, managing and processing large amounts of distributed imaging data. Integrated systems that combine data, meta-data and workflows are crucial for realising the opportunities presented by advances in imaging facilities. METHODS: This paper describes the design, implementation and operation of a multi-modality research imaging data management system that manages imaging data obtained from biomedical imaging scanners operated at Monash Biomedical Imaging (MBI), Monash University in Melbourne, Australia. In addition to Digital Imaging and Communications in Medicine (DICOM) images, raw data and non-DICOM biomedical data can be archived and distributed by the system. Imaging data are annotated with meta-data according to a study-centric data model and, therefore, scientific users can find, download and process data easily. RESULTS: The research imaging data management system ensures long-term usability, integrity inter-operability and integration of large imaging data. Research users can securely browse and download stored images and data, and upload processed data via subject-oriented informatics frameworks including the Distributed and Reflective Informatics System (DaRIS), and the Extensible Neuroimaging Archive Toolkit (XNAT).
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spelling pubmed-43830582015-04-13 Design, implementation and operation of a multimodality research imaging informatics repository Nguyen, Toan D Raniga, Parnesh Barnes, David G Egan, Gary F Health Inf Sci Syst Research BACKGROUND: Biomedical imaging research increasingly involves acquiring, managing and processing large amounts of distributed imaging data. Integrated systems that combine data, meta-data and workflows are crucial for realising the opportunities presented by advances in imaging facilities. METHODS: This paper describes the design, implementation and operation of a multi-modality research imaging data management system that manages imaging data obtained from biomedical imaging scanners operated at Monash Biomedical Imaging (MBI), Monash University in Melbourne, Australia. In addition to Digital Imaging and Communications in Medicine (DICOM) images, raw data and non-DICOM biomedical data can be archived and distributed by the system. Imaging data are annotated with meta-data according to a study-centric data model and, therefore, scientific users can find, download and process data easily. RESULTS: The research imaging data management system ensures long-term usability, integrity inter-operability and integration of large imaging data. Research users can securely browse and download stored images and data, and upload processed data via subject-oriented informatics frameworks including the Distributed and Reflective Informatics System (DaRIS), and the Extensible Neuroimaging Archive Toolkit (XNAT). BioMed Central 2015-02-24 /pmc/articles/PMC4383058/ /pubmed/25870760 http://dx.doi.org/10.1186/2047-2501-3-S1-S6 Text en Copyright © 2015 Nguyen et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Nguyen, Toan D
Raniga, Parnesh
Barnes, David G
Egan, Gary F
Design, implementation and operation of a multimodality research imaging informatics repository
title Design, implementation and operation of a multimodality research imaging informatics repository
title_full Design, implementation and operation of a multimodality research imaging informatics repository
title_fullStr Design, implementation and operation of a multimodality research imaging informatics repository
title_full_unstemmed Design, implementation and operation of a multimodality research imaging informatics repository
title_short Design, implementation and operation of a multimodality research imaging informatics repository
title_sort design, implementation and operation of a multimodality research imaging informatics repository
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383058/
https://www.ncbi.nlm.nih.gov/pubmed/25870760
http://dx.doi.org/10.1186/2047-2501-3-S1-S6
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