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LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study

Besides its important significance in plant taxonomy and phylogeny, sacred lotus (Nelumbo nucifera Gaertn.) might also hold the key to the secrets of aging, which attracts crescent attentions from researchers all over the world. The genetic or molecular studies on this species depend on its genome i...

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Detalles Bibliográficos
Autores principales: Wang, Kun, Deng, Jiao, Damaris, Rebecca Njeri, Yang, Mei, Xu, Liming, Yang, Pingfang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383347/
https://www.ncbi.nlm.nih.gov/pubmed/25819075
http://dx.doi.org/10.1093/database/bav023
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author Wang, Kun
Deng, Jiao
Damaris, Rebecca Njeri
Yang, Mei
Xu, Liming
Yang, Pingfang
author_facet Wang, Kun
Deng, Jiao
Damaris, Rebecca Njeri
Yang, Mei
Xu, Liming
Yang, Pingfang
author_sort Wang, Kun
collection PubMed
description Besides its important significance in plant taxonomy and phylogeny, sacred lotus (Nelumbo nucifera Gaertn.) might also hold the key to the secrets of aging, which attracts crescent attentions from researchers all over the world. The genetic or molecular studies on this species depend on its genome information. In 2013, two publications reported the sequencing of its full genome, based on which we constructed a database named as LOTUS-DB. It will provide comprehensive information on the annotation, gene function and expression for the sacred lotus. The information will facilitate users to efficiently query and browse genes, graphically visualize genome and download a variety of complex data information on genome DNA, coding sequence (CDS), transcripts or peptide sequences, promoters and markers. It will accelerate researches on gene cloning, functional identification of sacred lotus, and hence promote the studies on this species and plant genomics as well. Database URL: http://lotus-db.wbgcas.cn.
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spelling pubmed-43833472015-04-08 LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study Wang, Kun Deng, Jiao Damaris, Rebecca Njeri Yang, Mei Xu, Liming Yang, Pingfang Database (Oxford) Original Article Besides its important significance in plant taxonomy and phylogeny, sacred lotus (Nelumbo nucifera Gaertn.) might also hold the key to the secrets of aging, which attracts crescent attentions from researchers all over the world. The genetic or molecular studies on this species depend on its genome information. In 2013, two publications reported the sequencing of its full genome, based on which we constructed a database named as LOTUS-DB. It will provide comprehensive information on the annotation, gene function and expression for the sacred lotus. The information will facilitate users to efficiently query and browse genes, graphically visualize genome and download a variety of complex data information on genome DNA, coding sequence (CDS), transcripts or peptide sequences, promoters and markers. It will accelerate researches on gene cloning, functional identification of sacred lotus, and hence promote the studies on this species and plant genomics as well. Database URL: http://lotus-db.wbgcas.cn. Oxford University Press 2015-03-27 /pmc/articles/PMC4383347/ /pubmed/25819075 http://dx.doi.org/10.1093/database/bav023 Text en © The Author(s) 2015. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Wang, Kun
Deng, Jiao
Damaris, Rebecca Njeri
Yang, Mei
Xu, Liming
Yang, Pingfang
LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study
title LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study
title_full LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study
title_fullStr LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study
title_full_unstemmed LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study
title_short LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study
title_sort lotus-db: an integrative and interactive database for nelumbo nucifera study
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383347/
https://www.ncbi.nlm.nih.gov/pubmed/25819075
http://dx.doi.org/10.1093/database/bav023
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