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Flexible Adaptive Paradigms for fMRI Using a Novel Software Package ‘Brain Analysis in Real-Time’ (BART)
In this work we present a new open source software package offering a unified framework for the real-time adaptation of fMRI stimulation procedures. The software provides a straightforward setup and highly flexible approach to adapt fMRI paradigms while the experiment is running. The general framewo...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383593/ https://www.ncbi.nlm.nih.gov/pubmed/25837719 http://dx.doi.org/10.1371/journal.pone.0118890 |
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author | Hellrung, Lydia Hollmann, Maurice Zscheyge, Oliver Schlumm, Torsten Kalberlah, Christian Roggenhofer, Elisabeth Okon-Singer, Hadas Villringer, Arno Horstmann, Annette |
author_facet | Hellrung, Lydia Hollmann, Maurice Zscheyge, Oliver Schlumm, Torsten Kalberlah, Christian Roggenhofer, Elisabeth Okon-Singer, Hadas Villringer, Arno Horstmann, Annette |
author_sort | Hellrung, Lydia |
collection | PubMed |
description | In this work we present a new open source software package offering a unified framework for the real-time adaptation of fMRI stimulation procedures. The software provides a straightforward setup and highly flexible approach to adapt fMRI paradigms while the experiment is running. The general framework comprises the inclusion of parameters from subject’s compliance, such as directing gaze to visually presented stimuli and physiological fluctuations, like blood pressure or pulse. Additionally, this approach yields possibilities to investigate complex scientific questions, for example the influence of EEG rhythms or fMRI signals results themselves. To prove the concept of this approach, we used our software in a usability example for an fMRI experiment where the presentation of emotional pictures was dependent on the subject’s gaze position. This can have a significant impact on the results. So far, if this is taken into account during fMRI data analysis, it is commonly done by the post-hoc removal of erroneous trials. Here, we propose an a priori adaptation of the paradigm during the experiment’s runtime. Our fMRI findings clearly show the benefits of an adapted paradigm in terms of statistical power and higher effect sizes in emotion-related brain regions. This can be of special interest for all experiments with low statistical power due to a limited number of subjects, a limited amount of time, costs or available data to analyze, as is the case with real-time fMRI. |
format | Online Article Text |
id | pubmed-4383593 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-43835932015-04-09 Flexible Adaptive Paradigms for fMRI Using a Novel Software Package ‘Brain Analysis in Real-Time’ (BART) Hellrung, Lydia Hollmann, Maurice Zscheyge, Oliver Schlumm, Torsten Kalberlah, Christian Roggenhofer, Elisabeth Okon-Singer, Hadas Villringer, Arno Horstmann, Annette PLoS One Research Article In this work we present a new open source software package offering a unified framework for the real-time adaptation of fMRI stimulation procedures. The software provides a straightforward setup and highly flexible approach to adapt fMRI paradigms while the experiment is running. The general framework comprises the inclusion of parameters from subject’s compliance, such as directing gaze to visually presented stimuli and physiological fluctuations, like blood pressure or pulse. Additionally, this approach yields possibilities to investigate complex scientific questions, for example the influence of EEG rhythms or fMRI signals results themselves. To prove the concept of this approach, we used our software in a usability example for an fMRI experiment where the presentation of emotional pictures was dependent on the subject’s gaze position. This can have a significant impact on the results. So far, if this is taken into account during fMRI data analysis, it is commonly done by the post-hoc removal of erroneous trials. Here, we propose an a priori adaptation of the paradigm during the experiment’s runtime. Our fMRI findings clearly show the benefits of an adapted paradigm in terms of statistical power and higher effect sizes in emotion-related brain regions. This can be of special interest for all experiments with low statistical power due to a limited number of subjects, a limited amount of time, costs or available data to analyze, as is the case with real-time fMRI. Public Library of Science 2015-04-02 /pmc/articles/PMC4383593/ /pubmed/25837719 http://dx.doi.org/10.1371/journal.pone.0118890 Text en © 2015 Hellrung et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Hellrung, Lydia Hollmann, Maurice Zscheyge, Oliver Schlumm, Torsten Kalberlah, Christian Roggenhofer, Elisabeth Okon-Singer, Hadas Villringer, Arno Horstmann, Annette Flexible Adaptive Paradigms for fMRI Using a Novel Software Package ‘Brain Analysis in Real-Time’ (BART) |
title | Flexible Adaptive Paradigms for fMRI Using a Novel Software Package ‘Brain Analysis in Real-Time’ (BART) |
title_full | Flexible Adaptive Paradigms for fMRI Using a Novel Software Package ‘Brain Analysis in Real-Time’ (BART) |
title_fullStr | Flexible Adaptive Paradigms for fMRI Using a Novel Software Package ‘Brain Analysis in Real-Time’ (BART) |
title_full_unstemmed | Flexible Adaptive Paradigms for fMRI Using a Novel Software Package ‘Brain Analysis in Real-Time’ (BART) |
title_short | Flexible Adaptive Paradigms for fMRI Using a Novel Software Package ‘Brain Analysis in Real-Time’ (BART) |
title_sort | flexible adaptive paradigms for fmri using a novel software package ‘brain analysis in real-time’ (bart) |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383593/ https://www.ncbi.nlm.nih.gov/pubmed/25837719 http://dx.doi.org/10.1371/journal.pone.0118890 |
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