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SASBDB, a repository for biological small-angle scattering data
Small-angle X-ray and neutron scattering (SAXS and SANS) are fundamental tools used to study the global shapes of proteins, nucleic acids, macromolecular complexes and assemblies in solution. Due to recent advances in instrumentation and computational methods, the quantity of experimental scattering...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383894/ https://www.ncbi.nlm.nih.gov/pubmed/25352555 http://dx.doi.org/10.1093/nar/gku1047 |
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author | Valentini, Erica Kikhney, Alexey G. Previtali, Gianpietro Jeffries, Cy M. Svergun, Dmitri I. |
author_facet | Valentini, Erica Kikhney, Alexey G. Previtali, Gianpietro Jeffries, Cy M. Svergun, Dmitri I. |
author_sort | Valentini, Erica |
collection | PubMed |
description | Small-angle X-ray and neutron scattering (SAXS and SANS) are fundamental tools used to study the global shapes of proteins, nucleic acids, macromolecular complexes and assemblies in solution. Due to recent advances in instrumentation and computational methods, the quantity of experimental scattering data and subsequent publications is increasing dramatically. The need for a global repository allowing investigators to locate and access experimental scattering data and associated models was recently emphasized by the wwPDB small-angle scattering task force (SAStf). The small-angle scattering biological data bank (SASBDB) www.sasbdb.org has been designed in accordance with the plans of the SAStf as part of a future federated system of databases for biological SAXS and SANS. SASBDB is a comprehensive repository of freely accessible and fully searchable SAS experimental data and models that are deposited together with the relevant experimental conditions, sample details and instrument characteristics. At present the quality of deposited experimental data and the accuracy of models are manually curated, with future plans to integrate automated systems as the database expands. |
format | Online Article Text |
id | pubmed-4383894 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-43838942015-04-08 SASBDB, a repository for biological small-angle scattering data Valentini, Erica Kikhney, Alexey G. Previtali, Gianpietro Jeffries, Cy M. Svergun, Dmitri I. Nucleic Acids Res Database Issue Small-angle X-ray and neutron scattering (SAXS and SANS) are fundamental tools used to study the global shapes of proteins, nucleic acids, macromolecular complexes and assemblies in solution. Due to recent advances in instrumentation and computational methods, the quantity of experimental scattering data and subsequent publications is increasing dramatically. The need for a global repository allowing investigators to locate and access experimental scattering data and associated models was recently emphasized by the wwPDB small-angle scattering task force (SAStf). The small-angle scattering biological data bank (SASBDB) www.sasbdb.org has been designed in accordance with the plans of the SAStf as part of a future federated system of databases for biological SAXS and SANS. SASBDB is a comprehensive repository of freely accessible and fully searchable SAS experimental data and models that are deposited together with the relevant experimental conditions, sample details and instrument characteristics. At present the quality of deposited experimental data and the accuracy of models are manually curated, with future plans to integrate automated systems as the database expands. Oxford University Press 2014-10-28 2015-01-28 /pmc/articles/PMC4383894/ /pubmed/25352555 http://dx.doi.org/10.1093/nar/gku1047 Text en © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Valentini, Erica Kikhney, Alexey G. Previtali, Gianpietro Jeffries, Cy M. Svergun, Dmitri I. SASBDB, a repository for biological small-angle scattering data |
title | SASBDB, a repository for biological small-angle scattering data |
title_full | SASBDB, a repository for biological small-angle scattering data |
title_fullStr | SASBDB, a repository for biological small-angle scattering data |
title_full_unstemmed | SASBDB, a repository for biological small-angle scattering data |
title_short | SASBDB, a repository for biological small-angle scattering data |
title_sort | sasbdb, a repository for biological small-angle scattering data |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383894/ https://www.ncbi.nlm.nih.gov/pubmed/25352555 http://dx.doi.org/10.1093/nar/gku1047 |
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