The UCSC Cancer Genomics Browser: update 2015

The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu/) is a web-based application that integrates relevant data, analysis and visualization, allowing users to easily discover and share their research observations. Users can explore the relationship between genomic alterations and phenoty...

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Detalles Bibliográficos
Autores principales: Goldman, Mary, Craft, Brian, Swatloski, Teresa, Cline, Melissa, Morozova, Olena, Diekhans, Mark, Haussler, David, Zhu, Jingchun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Database Issue
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383911/
https://www.ncbi.nlm.nih.gov/pubmed/25392408
http://dx.doi.org/10.1093/nar/gku1073
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author Goldman, Mary
Craft, Brian
Swatloski, Teresa
Cline, Melissa
Morozova, Olena
Diekhans, Mark
Haussler, David
Zhu, Jingchun
author_facet Goldman, Mary
Craft, Brian
Swatloski, Teresa
Cline, Melissa
Morozova, Olena
Diekhans, Mark
Haussler, David
Zhu, Jingchun
author_sort Goldman, Mary
collection PubMed
description The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu/) is a web-based application that integrates relevant data, analysis and visualization, allowing users to easily discover and share their research observations. Users can explore the relationship between genomic alterations and phenotypes by visualizing various -omic data alongside clinical and phenotypic features, such as age, subtype classifications and genomic biomarkers. The Cancer Genomics Browser currently hosts 575 public datasets from genome-wide analyses of over 227 000 samples, including datasets from TCGA, CCLE, Connectivity Map and TARGET. Users can download and upload clinical data, generate Kaplan–Meier plots dynamically, export data directly to Galaxy for analysis, plus generate URL bookmarks of specific views of the data to share with others.
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spelling pubmed-43839112015-04-08 The UCSC Cancer Genomics Browser: update 2015 Goldman, Mary Craft, Brian Swatloski, Teresa Cline, Melissa Morozova, Olena Diekhans, Mark Haussler, David Zhu, Jingchun Nucleic Acids Res Database Issue The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu/) is a web-based application that integrates relevant data, analysis and visualization, allowing users to easily discover and share their research observations. Users can explore the relationship between genomic alterations and phenotypes by visualizing various -omic data alongside clinical and phenotypic features, such as age, subtype classifications and genomic biomarkers. The Cancer Genomics Browser currently hosts 575 public datasets from genome-wide analyses of over 227 000 samples, including datasets from TCGA, CCLE, Connectivity Map and TARGET. Users can download and upload clinical data, generate Kaplan–Meier plots dynamically, export data directly to Galaxy for analysis, plus generate URL bookmarks of specific views of the data to share with others. Oxford University Press 2014-11-11 2015-01-28 /pmc/articles/PMC4383911/ /pubmed/25392408 http://dx.doi.org/10.1093/nar/gku1073 Text en © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Goldman, Mary
Craft, Brian
Swatloski, Teresa
Cline, Melissa
Morozova, Olena
Diekhans, Mark
Haussler, David
Zhu, Jingchun
The UCSC Cancer Genomics Browser: update 2015
title The UCSC Cancer Genomics Browser: update 2015
title_full The UCSC Cancer Genomics Browser: update 2015
title_fullStr The UCSC Cancer Genomics Browser: update 2015
title_full_unstemmed The UCSC Cancer Genomics Browser: update 2015
title_short The UCSC Cancer Genomics Browser: update 2015
title_sort ucsc cancer genomics browser: update 2015
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383911/
https://www.ncbi.nlm.nih.gov/pubmed/25392408
http://dx.doi.org/10.1093/nar/gku1073
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