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COSMIC: exploring the world's knowledge of somatic mutations in human cancer
COSMIC, the Catalogue Of Somatic Mutations In Cancer (http://cancer.sanger.ac.uk) is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. Our latest release (v70; Aug 2014) describes 2 002 811 coding point mutations in over one milli...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383913/ https://www.ncbi.nlm.nih.gov/pubmed/25355519 http://dx.doi.org/10.1093/nar/gku1075 |
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author | Forbes, Simon A. Beare, David Gunasekaran, Prasad Leung, Kenric Bindal, Nidhi Boutselakis, Harry Ding, Minjie Bamford, Sally Cole, Charlotte Ward, Sari Kok, Chai Yin Jia, Mingming De, Tisham Teague, Jon W. Stratton, Michael R. McDermott, Ultan Campbell, Peter J. |
author_facet | Forbes, Simon A. Beare, David Gunasekaran, Prasad Leung, Kenric Bindal, Nidhi Boutselakis, Harry Ding, Minjie Bamford, Sally Cole, Charlotte Ward, Sari Kok, Chai Yin Jia, Mingming De, Tisham Teague, Jon W. Stratton, Michael R. McDermott, Ultan Campbell, Peter J. |
author_sort | Forbes, Simon A. |
collection | PubMed |
description | COSMIC, the Catalogue Of Somatic Mutations In Cancer (http://cancer.sanger.ac.uk) is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. Our latest release (v70; Aug 2014) describes 2 002 811 coding point mutations in over one million tumor samples and across most human genes. To emphasize depth of knowledge on known cancer genes, mutation information is curated manually from the scientific literature, allowing very precise definitions of disease types and patient details. Combination of almost 20 000 published studies gives substantial resolution of how mutations and phenotypes relate in human cancer, providing insights into the stratification of mutations and biomarkers across cancer patient populations. Conversely, our curation of cancer genomes (over 12 000) emphasizes knowledge breadth, driving discovery of unrecognized cancer-driving hotspots and molecular targets. Our high-resolution curation approach is globally unique, giving substantial insight into molecular biomarkers in human oncology. In addition, COSMIC also details more than six million noncoding mutations, 10 534 gene fusions, 61 299 genome rearrangements, 695 504 abnormal copy number segments and 60 119 787 abnormal expression variants. All these types of somatic mutation are annotated to both the human genome and each affected coding gene, then correlated across disease and mutation types. |
format | Online Article Text |
id | pubmed-4383913 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-43839132015-04-08 COSMIC: exploring the world's knowledge of somatic mutations in human cancer Forbes, Simon A. Beare, David Gunasekaran, Prasad Leung, Kenric Bindal, Nidhi Boutselakis, Harry Ding, Minjie Bamford, Sally Cole, Charlotte Ward, Sari Kok, Chai Yin Jia, Mingming De, Tisham Teague, Jon W. Stratton, Michael R. McDermott, Ultan Campbell, Peter J. Nucleic Acids Res Database Issue COSMIC, the Catalogue Of Somatic Mutations In Cancer (http://cancer.sanger.ac.uk) is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. Our latest release (v70; Aug 2014) describes 2 002 811 coding point mutations in over one million tumor samples and across most human genes. To emphasize depth of knowledge on known cancer genes, mutation information is curated manually from the scientific literature, allowing very precise definitions of disease types and patient details. Combination of almost 20 000 published studies gives substantial resolution of how mutations and phenotypes relate in human cancer, providing insights into the stratification of mutations and biomarkers across cancer patient populations. Conversely, our curation of cancer genomes (over 12 000) emphasizes knowledge breadth, driving discovery of unrecognized cancer-driving hotspots and molecular targets. Our high-resolution curation approach is globally unique, giving substantial insight into molecular biomarkers in human oncology. In addition, COSMIC also details more than six million noncoding mutations, 10 534 gene fusions, 61 299 genome rearrangements, 695 504 abnormal copy number segments and 60 119 787 abnormal expression variants. All these types of somatic mutation are annotated to both the human genome and each affected coding gene, then correlated across disease and mutation types. Oxford University Press 2014-10-29 2015-01-28 /pmc/articles/PMC4383913/ /pubmed/25355519 http://dx.doi.org/10.1093/nar/gku1075 Text en © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Forbes, Simon A. Beare, David Gunasekaran, Prasad Leung, Kenric Bindal, Nidhi Boutselakis, Harry Ding, Minjie Bamford, Sally Cole, Charlotte Ward, Sari Kok, Chai Yin Jia, Mingming De, Tisham Teague, Jon W. Stratton, Michael R. McDermott, Ultan Campbell, Peter J. COSMIC: exploring the world's knowledge of somatic mutations in human cancer |
title | COSMIC: exploring the world's knowledge of somatic mutations in human cancer |
title_full | COSMIC: exploring the world's knowledge of somatic mutations in human cancer |
title_fullStr | COSMIC: exploring the world's knowledge of somatic mutations in human cancer |
title_full_unstemmed | COSMIC: exploring the world's knowledge of somatic mutations in human cancer |
title_short | COSMIC: exploring the world's knowledge of somatic mutations in human cancer |
title_sort | cosmic: exploring the world's knowledge of somatic mutations in human cancer |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383913/ https://www.ncbi.nlm.nih.gov/pubmed/25355519 http://dx.doi.org/10.1093/nar/gku1075 |
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