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COSMIC: exploring the world's knowledge of somatic mutations in human cancer

COSMIC, the Catalogue Of Somatic Mutations In Cancer (http://cancer.sanger.ac.uk) is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. Our latest release (v70; Aug 2014) describes 2 002 811 coding point mutations in over one milli...

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Autores principales: Forbes, Simon A., Beare, David, Gunasekaran, Prasad, Leung, Kenric, Bindal, Nidhi, Boutselakis, Harry, Ding, Minjie, Bamford, Sally, Cole, Charlotte, Ward, Sari, Kok, Chai Yin, Jia, Mingming, De, Tisham, Teague, Jon W., Stratton, Michael R., McDermott, Ultan, Campbell, Peter J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383913/
https://www.ncbi.nlm.nih.gov/pubmed/25355519
http://dx.doi.org/10.1093/nar/gku1075
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author Forbes, Simon A.
Beare, David
Gunasekaran, Prasad
Leung, Kenric
Bindal, Nidhi
Boutselakis, Harry
Ding, Minjie
Bamford, Sally
Cole, Charlotte
Ward, Sari
Kok, Chai Yin
Jia, Mingming
De, Tisham
Teague, Jon W.
Stratton, Michael R.
McDermott, Ultan
Campbell, Peter J.
author_facet Forbes, Simon A.
Beare, David
Gunasekaran, Prasad
Leung, Kenric
Bindal, Nidhi
Boutselakis, Harry
Ding, Minjie
Bamford, Sally
Cole, Charlotte
Ward, Sari
Kok, Chai Yin
Jia, Mingming
De, Tisham
Teague, Jon W.
Stratton, Michael R.
McDermott, Ultan
Campbell, Peter J.
author_sort Forbes, Simon A.
collection PubMed
description COSMIC, the Catalogue Of Somatic Mutations In Cancer (http://cancer.sanger.ac.uk) is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. Our latest release (v70; Aug 2014) describes 2 002 811 coding point mutations in over one million tumor samples and across most human genes. To emphasize depth of knowledge on known cancer genes, mutation information is curated manually from the scientific literature, allowing very precise definitions of disease types and patient details. Combination of almost 20 000 published studies gives substantial resolution of how mutations and phenotypes relate in human cancer, providing insights into the stratification of mutations and biomarkers across cancer patient populations. Conversely, our curation of cancer genomes (over 12 000) emphasizes knowledge breadth, driving discovery of unrecognized cancer-driving hotspots and molecular targets. Our high-resolution curation approach is globally unique, giving substantial insight into molecular biomarkers in human oncology. In addition, COSMIC also details more than six million noncoding mutations, 10 534 gene fusions, 61 299 genome rearrangements, 695 504 abnormal copy number segments and 60 119 787 abnormal expression variants. All these types of somatic mutation are annotated to both the human genome and each affected coding gene, then correlated across disease and mutation types.
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spelling pubmed-43839132015-04-08 COSMIC: exploring the world's knowledge of somatic mutations in human cancer Forbes, Simon A. Beare, David Gunasekaran, Prasad Leung, Kenric Bindal, Nidhi Boutselakis, Harry Ding, Minjie Bamford, Sally Cole, Charlotte Ward, Sari Kok, Chai Yin Jia, Mingming De, Tisham Teague, Jon W. Stratton, Michael R. McDermott, Ultan Campbell, Peter J. Nucleic Acids Res Database Issue COSMIC, the Catalogue Of Somatic Mutations In Cancer (http://cancer.sanger.ac.uk) is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. Our latest release (v70; Aug 2014) describes 2 002 811 coding point mutations in over one million tumor samples and across most human genes. To emphasize depth of knowledge on known cancer genes, mutation information is curated manually from the scientific literature, allowing very precise definitions of disease types and patient details. Combination of almost 20 000 published studies gives substantial resolution of how mutations and phenotypes relate in human cancer, providing insights into the stratification of mutations and biomarkers across cancer patient populations. Conversely, our curation of cancer genomes (over 12 000) emphasizes knowledge breadth, driving discovery of unrecognized cancer-driving hotspots and molecular targets. Our high-resolution curation approach is globally unique, giving substantial insight into molecular biomarkers in human oncology. In addition, COSMIC also details more than six million noncoding mutations, 10 534 gene fusions, 61 299 genome rearrangements, 695 504 abnormal copy number segments and 60 119 787 abnormal expression variants. All these types of somatic mutation are annotated to both the human genome and each affected coding gene, then correlated across disease and mutation types. Oxford University Press 2014-10-29 2015-01-28 /pmc/articles/PMC4383913/ /pubmed/25355519 http://dx.doi.org/10.1093/nar/gku1075 Text en © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Forbes, Simon A.
Beare, David
Gunasekaran, Prasad
Leung, Kenric
Bindal, Nidhi
Boutselakis, Harry
Ding, Minjie
Bamford, Sally
Cole, Charlotte
Ward, Sari
Kok, Chai Yin
Jia, Mingming
De, Tisham
Teague, Jon W.
Stratton, Michael R.
McDermott, Ultan
Campbell, Peter J.
COSMIC: exploring the world's knowledge of somatic mutations in human cancer
title COSMIC: exploring the world's knowledge of somatic mutations in human cancer
title_full COSMIC: exploring the world's knowledge of somatic mutations in human cancer
title_fullStr COSMIC: exploring the world's knowledge of somatic mutations in human cancer
title_full_unstemmed COSMIC: exploring the world's knowledge of somatic mutations in human cancer
title_short COSMIC: exploring the world's knowledge of somatic mutations in human cancer
title_sort cosmic: exploring the world's knowledge of somatic mutations in human cancer
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383913/
https://www.ncbi.nlm.nih.gov/pubmed/25355519
http://dx.doi.org/10.1093/nar/gku1075
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