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The Sol Genomics Network (SGN)—from genotype to phenotype to breeding
The Sol Genomics Network (SGN, http://solgenomics.net) is a web portal with genomic and phenotypic data, and analysis tools for the Solanaceae family and close relatives. SGN hosts whole genome data for an increasing number of Solanaceae family members including tomato, potato, pepper, eggplant, tob...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383978/ https://www.ncbi.nlm.nih.gov/pubmed/25428362 http://dx.doi.org/10.1093/nar/gku1195 |
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author | Fernandez-Pozo, Noe Menda, Naama Edwards, Jeremy D. Saha, Surya Tecle, Isaak Y. Strickler, Susan R. Bombarely, Aureliano Fisher-York, Thomas Pujar, Anuradha Foerster, Hartmut Yan, Aimin Mueller, Lukas A. |
author_facet | Fernandez-Pozo, Noe Menda, Naama Edwards, Jeremy D. Saha, Surya Tecle, Isaak Y. Strickler, Susan R. Bombarely, Aureliano Fisher-York, Thomas Pujar, Anuradha Foerster, Hartmut Yan, Aimin Mueller, Lukas A. |
author_sort | Fernandez-Pozo, Noe |
collection | PubMed |
description | The Sol Genomics Network (SGN, http://solgenomics.net) is a web portal with genomic and phenotypic data, and analysis tools for the Solanaceae family and close relatives. SGN hosts whole genome data for an increasing number of Solanaceae family members including tomato, potato, pepper, eggplant, tobacco and Nicotiana benthamiana. The database also stores loci and phenotype data, which researchers can upload and edit with user-friendly web interfaces. Tools such as BLAST, GBrowse and JBrowse for browsing genomes, expression and map data viewers, a locus community annotation system and a QTL analysis tools are available. A new tool was recently implemented to improve Virus-Induced Gene Silencing (VIGS) constructs called the SGN VIGS tool. With the growing genomic and phenotypic data in the database, SGN is now advancing to develop new web-based breeding tools and implement the code and database structure for other species or clade-specific databases. |
format | Online Article Text |
id | pubmed-4383978 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-43839782015-04-08 The Sol Genomics Network (SGN)—from genotype to phenotype to breeding Fernandez-Pozo, Noe Menda, Naama Edwards, Jeremy D. Saha, Surya Tecle, Isaak Y. Strickler, Susan R. Bombarely, Aureliano Fisher-York, Thomas Pujar, Anuradha Foerster, Hartmut Yan, Aimin Mueller, Lukas A. Nucleic Acids Res Database Issue The Sol Genomics Network (SGN, http://solgenomics.net) is a web portal with genomic and phenotypic data, and analysis tools for the Solanaceae family and close relatives. SGN hosts whole genome data for an increasing number of Solanaceae family members including tomato, potato, pepper, eggplant, tobacco and Nicotiana benthamiana. The database also stores loci and phenotype data, which researchers can upload and edit with user-friendly web interfaces. Tools such as BLAST, GBrowse and JBrowse for browsing genomes, expression and map data viewers, a locus community annotation system and a QTL analysis tools are available. A new tool was recently implemented to improve Virus-Induced Gene Silencing (VIGS) constructs called the SGN VIGS tool. With the growing genomic and phenotypic data in the database, SGN is now advancing to develop new web-based breeding tools and implement the code and database structure for other species or clade-specific databases. Oxford University Press 2014-11-26 2015-01-28 /pmc/articles/PMC4383978/ /pubmed/25428362 http://dx.doi.org/10.1093/nar/gku1195 Text en © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Fernandez-Pozo, Noe Menda, Naama Edwards, Jeremy D. Saha, Surya Tecle, Isaak Y. Strickler, Susan R. Bombarely, Aureliano Fisher-York, Thomas Pujar, Anuradha Foerster, Hartmut Yan, Aimin Mueller, Lukas A. The Sol Genomics Network (SGN)—from genotype to phenotype to breeding |
title | The Sol Genomics Network (SGN)—from genotype to phenotype to breeding |
title_full | The Sol Genomics Network (SGN)—from genotype to phenotype to breeding |
title_fullStr | The Sol Genomics Network (SGN)—from genotype to phenotype to breeding |
title_full_unstemmed | The Sol Genomics Network (SGN)—from genotype to phenotype to breeding |
title_short | The Sol Genomics Network (SGN)—from genotype to phenotype to breeding |
title_sort | sol genomics network (sgn)—from genotype to phenotype to breeding |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383978/ https://www.ncbi.nlm.nih.gov/pubmed/25428362 http://dx.doi.org/10.1093/nar/gku1195 |
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