Cargando…

VirusMentha: a new resource for virus-host protein interactions

Viral infections often cause diseases by perturbing several cellular processes in the infected host. Viral proteins target host proteins and either form new complexes or modulate the formation of functional host complexes. Describing and understanding the perturbation of the host interactome followi...

Descripción completa

Detalles Bibliográficos
Autores principales: Calderone, Alberto, Licata, Luana, Cesareni, Gianni
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4384001/
https://www.ncbi.nlm.nih.gov/pubmed/25217587
http://dx.doi.org/10.1093/nar/gku830
_version_ 1782364830242439168
author Calderone, Alberto
Licata, Luana
Cesareni, Gianni
author_facet Calderone, Alberto
Licata, Luana
Cesareni, Gianni
author_sort Calderone, Alberto
collection PubMed
description Viral infections often cause diseases by perturbing several cellular processes in the infected host. Viral proteins target host proteins and either form new complexes or modulate the formation of functional host complexes. Describing and understanding the perturbation of the host interactome following viral infection is essential for basic virology and for the development of antiviral therapies. In order to provide a general overview of such interactions, a few years ago we developed VirusMINT. We have now extended the scope and coverage of VirusMINT and established VirusMentha, a new virus–virus and virus–host interaction resource build on the detailed curation protocols of the IMEx consortium and on the integration strategies developed for mentha. VirusMentha is regularly and automatically updated every week by capturing, via the PSICQUIC protocol, interactions curated by five different databases that are part of the IMEx consortium. VirusMentha can be freely browsed at http://virusmentha.uniroma2.it/ and its complete data set is available for download.
format Online
Article
Text
id pubmed-4384001
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-43840012015-04-08 VirusMentha: a new resource for virus-host protein interactions Calderone, Alberto Licata, Luana Cesareni, Gianni Nucleic Acids Res Database Issue Viral infections often cause diseases by perturbing several cellular processes in the infected host. Viral proteins target host proteins and either form new complexes or modulate the formation of functional host complexes. Describing and understanding the perturbation of the host interactome following viral infection is essential for basic virology and for the development of antiviral therapies. In order to provide a general overview of such interactions, a few years ago we developed VirusMINT. We have now extended the scope and coverage of VirusMINT and established VirusMentha, a new virus–virus and virus–host interaction resource build on the detailed curation protocols of the IMEx consortium and on the integration strategies developed for mentha. VirusMentha is regularly and automatically updated every week by capturing, via the PSICQUIC protocol, interactions curated by five different databases that are part of the IMEx consortium. VirusMentha can be freely browsed at http://virusmentha.uniroma2.it/ and its complete data set is available for download. Oxford University Press 2014-09-12 2015-01-28 /pmc/articles/PMC4384001/ /pubmed/25217587 http://dx.doi.org/10.1093/nar/gku830 Text en © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Calderone, Alberto
Licata, Luana
Cesareni, Gianni
VirusMentha: a new resource for virus-host protein interactions
title VirusMentha: a new resource for virus-host protein interactions
title_full VirusMentha: a new resource for virus-host protein interactions
title_fullStr VirusMentha: a new resource for virus-host protein interactions
title_full_unstemmed VirusMentha: a new resource for virus-host protein interactions
title_short VirusMentha: a new resource for virus-host protein interactions
title_sort virusmentha: a new resource for virus-host protein interactions
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4384001/
https://www.ncbi.nlm.nih.gov/pubmed/25217587
http://dx.doi.org/10.1093/nar/gku830
work_keys_str_mv AT calderonealberto virusmenthaanewresourceforvirushostproteininteractions
AT licataluana virusmenthaanewresourceforvirushostproteininteractions
AT cesarenigianni virusmenthaanewresourceforvirushostproteininteractions