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VirusMentha: a new resource for virus-host protein interactions
Viral infections often cause diseases by perturbing several cellular processes in the infected host. Viral proteins target host proteins and either form new complexes or modulate the formation of functional host complexes. Describing and understanding the perturbation of the host interactome followi...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4384001/ https://www.ncbi.nlm.nih.gov/pubmed/25217587 http://dx.doi.org/10.1093/nar/gku830 |
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author | Calderone, Alberto Licata, Luana Cesareni, Gianni |
author_facet | Calderone, Alberto Licata, Luana Cesareni, Gianni |
author_sort | Calderone, Alberto |
collection | PubMed |
description | Viral infections often cause diseases by perturbing several cellular processes in the infected host. Viral proteins target host proteins and either form new complexes or modulate the formation of functional host complexes. Describing and understanding the perturbation of the host interactome following viral infection is essential for basic virology and for the development of antiviral therapies. In order to provide a general overview of such interactions, a few years ago we developed VirusMINT. We have now extended the scope and coverage of VirusMINT and established VirusMentha, a new virus–virus and virus–host interaction resource build on the detailed curation protocols of the IMEx consortium and on the integration strategies developed for mentha. VirusMentha is regularly and automatically updated every week by capturing, via the PSICQUIC protocol, interactions curated by five different databases that are part of the IMEx consortium. VirusMentha can be freely browsed at http://virusmentha.uniroma2.it/ and its complete data set is available for download. |
format | Online Article Text |
id | pubmed-4384001 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-43840012015-04-08 VirusMentha: a new resource for virus-host protein interactions Calderone, Alberto Licata, Luana Cesareni, Gianni Nucleic Acids Res Database Issue Viral infections often cause diseases by perturbing several cellular processes in the infected host. Viral proteins target host proteins and either form new complexes or modulate the formation of functional host complexes. Describing and understanding the perturbation of the host interactome following viral infection is essential for basic virology and for the development of antiviral therapies. In order to provide a general overview of such interactions, a few years ago we developed VirusMINT. We have now extended the scope and coverage of VirusMINT and established VirusMentha, a new virus–virus and virus–host interaction resource build on the detailed curation protocols of the IMEx consortium and on the integration strategies developed for mentha. VirusMentha is regularly and automatically updated every week by capturing, via the PSICQUIC protocol, interactions curated by five different databases that are part of the IMEx consortium. VirusMentha can be freely browsed at http://virusmentha.uniroma2.it/ and its complete data set is available for download. Oxford University Press 2014-09-12 2015-01-28 /pmc/articles/PMC4384001/ /pubmed/25217587 http://dx.doi.org/10.1093/nar/gku830 Text en © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Calderone, Alberto Licata, Luana Cesareni, Gianni VirusMentha: a new resource for virus-host protein interactions |
title | VirusMentha: a new resource for virus-host protein interactions |
title_full | VirusMentha: a new resource for virus-host protein interactions |
title_fullStr | VirusMentha: a new resource for virus-host protein interactions |
title_full_unstemmed | VirusMentha: a new resource for virus-host protein interactions |
title_short | VirusMentha: a new resource for virus-host protein interactions |
title_sort | virusmentha: a new resource for virus-host protein interactions |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4384001/ https://www.ncbi.nlm.nih.gov/pubmed/25217587 http://dx.doi.org/10.1093/nar/gku830 |
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