Cargando…

Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics

Our ability to model the dynamics of signal transduction networks will depend on accurate methods to quantify levels of protein phosphorylation on a global scale. Here we describe a motif-targeting quantitation method for phosphorylation stoichiometry typing. Proteome-wide phosphorylation stoichiome...

Descripción completa

Detalles Bibliográficos
Autores principales:	Tsai, Chia-Feng, Wang, Yi-Ting, Yen, Hsin-Yung, Tsou, Chih-Chiang, Ku, Wei-Chi, Lin, Pei-Yi, Chen, Hsuan-Yu, Nesvizhskii, Alexey I., Ishihama, Yasushi, Chen, Yu-Ju
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Pub. Group 2015
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4389224/ https://www.ncbi.nlm.nih.gov/pubmed/25814448 http://dx.doi.org/10.1038/ncomms7622

Ejemplares similares

A large-scale method to measure absolute protein phosphorylation stoichiometries
por: Wu, Ronghu, et al.
Publicado: (2011)

Identification of Endogenous Kinase Substrates by Proximity Labeling Combined with Kinase Perturbation and Phosphorylation Motifs
por: Niinae, Tomoya, et al.
Publicado: (2021)

Multilayered regulation of proteome stoichiometry
por: Ishikawa, Koji
Publicado: (2021)

Phosphorylation Stoichiometries of Human Eukaryotic Initiation Factors
por: Andaya, Armann, et al.
Publicado: (2014)

Effect of Phosphorylation on the Collision Cross Sections of Peptide Ions in Ion Mobility Spectrometry
por: Ogata, Kosuke, et al.
Publicado: (2021)

Motif-All: discovering all phosphorylation motifs
por: He, Zengyou, et al.
Publicado: (2011)

Probing the stoichiometry of β2-adrenergic receptor phosphorylation by targeted mass spectrometry
por: Gao, Shujuan, et al.
Publicado: (2014)

Digital nanoreactors to control absolute stoichiometry and spatiotemporal behavior of DNA receptors within lipid bilayers
por: Maingi, Vishal, et al.
Publicado: (2023)

Motif-Targeting Phosphoproteome Analysis of Cancer Cells for Profiling Kinase Inhibitors
por: Ogata, Kosuke, et al.
Publicado: (2022)

Motif-centric phosphoproteomics to target kinase-mediated signaling pathways
por: Tsai, Chia-Feng, et al.
Publicado: (2022)

Label-free quantitative proteomics of CD133-positive liver cancer stem cells
por: Tsai, Sheng-Ta, et al.
Publicado: (2012)

Multifaceted Stoichiometry Control of Bacterial Operons Revealed by Deep Proteome Quantification
por: Zhao, Jing, et al.
Publicado: (2019)

Isolation of Acetylated and Unmodified Protein N-Terminal Peptides by Strong Cation Exchange Chromatographic Separation of TrypN-Digested Peptides
por: Chang, Chih-Hsiang, et al.
Publicado: (2020)

Change of histone H3 lysine 14 acetylation stoichiometry in human monocyte derived macrophages as determined by MS-based absolute targeted quantitative proteomic approach: HIV infection and methamphetamine exposure
por: Macur, Katarzyna, et al.
Publicado: (2023)

Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis
por: Sugiyama, Naoyuki, et al.
Publicado: (2008)

Comparative Proteomic Analysis of Proteins Involved in the Tumorigenic Process of Seminal Vesicle Carcinoma in Transgenic Mice
por: Chang, Wei-Chao, et al.
Publicado: (2010)

The Subcellular Localization of an Aquaporin-2 Tetramer Depends on the Stoichiometry of Phosphorylated and Nonphosphorylated Monomers
por: Kamsteeg, E.J., et al.
Publicado: (2000)

Discovery of Protein Phosphorylation Motifs through Exploratory Data Analysis
por: Chen, Yi-Cheng, et al.
Publicado: (2011)

A multi-center study benchmarks software tools for label-free proteome quantification
por: Navarro, Pedro, et al.
Publicado: (2016)

OryzaPG-DB: Rice Proteome Database based on Shotgun Proteogenomics
por: Helmy, Mohamed, et al.
Publicado: (2011)

Phosphorylation Dependence and Stoichiometry of the Complex Formed by Tyrosine Hydroxylase and 14-3-3γ
por: Kleppe, Rune, et al.
Publicado: (2014)

Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency
por: Nair, Surag, et al.
Publicado: (2023)

The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment
por: Ning, Kang, et al.
Publicado: (2010)

Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data
por: Imamura, Haruna, et al.
Publicado: (2010)

Nestin Protein Is Phosphorylated in Adult Neural Stem/Progenitor Cells and Not Endothelial Progenitor Cells
por: Namiki, Jun, et al.
Publicado: (2012)

The Second Asia-Oceania Human Proteome Organization (AOHUPO) Online Education Series on the Renaissance of Clinical Proteomics: Biomarkers, Imaging and Therapeutics
por: Low, Teck Yew, et al.
Publicado: (2022)

Differential Proteomic Analysis of Listeria monocytogenes during High-Pressure Processing
por: Chen, Yi-An, et al.
Publicado: (2022)

Stoichiometry of STAT3 and Mitochondrial Proteins: IMPLICATIONS FOR THE REGULATION OF OXIDATIVE PHOSPHORYLATION BY PROTEIN-PROTEIN INTERACTIONS
por: Phillips, Darci, et al.
Publicado: (2010)

De Novo Linear Phosphorylation Site Motifs for BCR-ABL Kinase Revealed by Phospho-Proteomics in Yeast
por: Smolnig, Martin, et al.
Publicado: (2023)

An Informatics-assisted Label-free Approach for Personalized Tissue Membrane Proteomics: Case Study on Colorectal Cancer
por: Han, Chia-Li, et al.
Publicado: (2011)

Quantitative Proteomics Analysis by Isobaric Tags for Relative and Absolute Quantitation Identified Lumican as a Potential Marker for Acute Aortic Dissection
por: Gu, Guorong, et al.
Publicado: (2011)

Thin-Film Transistor-Based Biosensors for Determining Stoichiometry of Biochemical Reactions
por: Wang, Yi-Wen, et al.
Publicado: (2016)

Stoichiometry, Absolute Abundance, and Localization of Proteins in the Bacillus cereus Spore Coat Insoluble Fraction Determined Using a QconCAT Approach
por: Stelder, Sacha K., et al.
Publicado: (2017)

MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics
por: Polasky, Daniel A., et al.
Publicado: (2023)

MSFragger: ultrafast and comprehensive peptide identification in shotgun proteomics
por: Kong, Andy T., et al.
Publicado: (2017)

Improved Image Quality for Static BLADE Magnetic Resonance Imaging Using the Total-Variation Regularized Least Absolute Deviation Solver
por: Chen, Hsin-Chia, et al.
Publicado: (2021)

On the stoichiometry of zirconium carbide
por: Gasparrini, Claudia, et al.
Publicado: (2020)

Predicting Early Loss of Lateral Spread Response before Decompression in Hemifacial Spasm Surgery
por: Chan, Ryan Wing-Yuk, et al.
Publicado: (2021)

Onco-proteogenomics: a novel approach to identify cancer-specific mutations combining proteomics and transcriptome deep sequencing
por: Helmy, Mohamed, et al.
Publicado: (2010)

Correction to “Stoichiometry, Absolute Abundance, and Localization of Proteins in the Bacillus cereus Spore Coat Insoluble Fraction Determined Using a QconCAT Approach”
por: Stelder, Sacha K., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_jt2cmaef9o17jmsf6pi2rvdr84