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Joint Effect of CFH and ARMS2/HTRA1 Polymorphisms on Neovascular Age-Related Macular Degeneration in Chinese Population

Purpose. The etiology of neovascular age-related macular degeneration (nAMD) cannot be completely explained by identified environmental risk factors or single-locus gene variants. This study was to explore the potential interactions among gene variants on nAMD in Chinese population. Methods. 43 SNPs...

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Autores principales: Fang, Kai, Gao, Pei, Tian, Jun, Qin, Xueying, Yu, Wenzhen, Li, Juan, Chen, Qing, Huang, Lvzhen, Chen, Dafang, Hu, Yonghua, Li, Xiaoxin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4389821/
https://www.ncbi.nlm.nih.gov/pubmed/25883802
http://dx.doi.org/10.1155/2015/821918
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author Fang, Kai
Gao, Pei
Tian, Jun
Qin, Xueying
Yu, Wenzhen
Li, Juan
Chen, Qing
Huang, Lvzhen
Chen, Dafang
Hu, Yonghua
Li, Xiaoxin
author_facet Fang, Kai
Gao, Pei
Tian, Jun
Qin, Xueying
Yu, Wenzhen
Li, Juan
Chen, Qing
Huang, Lvzhen
Chen, Dafang
Hu, Yonghua
Li, Xiaoxin
author_sort Fang, Kai
collection PubMed
description Purpose. The etiology of neovascular age-related macular degeneration (nAMD) cannot be completely explained by identified environmental risk factors or single-locus gene variants. This study was to explore the potential interactions among gene variants on nAMD in Chinese population. Methods. 43 SNPs located in different genes were genotyped in 932 Chinese individuals (464 nAMD patients and 468 controls). We explored the potential interactions among gene variants using generalized multifactor dimensionality reduction (GMDR) algorithm and the method to measure the departure from the additivity model. Results. The joint effect that involved CFH rs1061170 and HTRA1 rs3793917 was shown statistically significant (P < 0.001) with the highest cross-validation consistency (10/10) and the best testing balanced accuracy (64.50%). In addition, based on the method to measure the departure from the additivity model, the synergy index (S) was 2.63 (1.09–6.38) and the attributable proportion due to interaction (AP) was 55.7% (21.4%–89.9%), which suggested that a common pathway may exist for these genes for nAMD. Those who carried CC for rs3793917 and TC/CC for rs1061170 were at the highest risk of nAMD (OR: 9.76, 95% CI: 4.65–20.51). Conclusions. Evidence that the joint effect that involved CFH and ARMS2/HTRA1 may contribute to the risk of neovascular AMD in Chinese population was obtained.
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spelling pubmed-43898212015-04-16 Joint Effect of CFH and ARMS2/HTRA1 Polymorphisms on Neovascular Age-Related Macular Degeneration in Chinese Population Fang, Kai Gao, Pei Tian, Jun Qin, Xueying Yu, Wenzhen Li, Juan Chen, Qing Huang, Lvzhen Chen, Dafang Hu, Yonghua Li, Xiaoxin J Ophthalmol Research Article Purpose. The etiology of neovascular age-related macular degeneration (nAMD) cannot be completely explained by identified environmental risk factors or single-locus gene variants. This study was to explore the potential interactions among gene variants on nAMD in Chinese population. Methods. 43 SNPs located in different genes were genotyped in 932 Chinese individuals (464 nAMD patients and 468 controls). We explored the potential interactions among gene variants using generalized multifactor dimensionality reduction (GMDR) algorithm and the method to measure the departure from the additivity model. Results. The joint effect that involved CFH rs1061170 and HTRA1 rs3793917 was shown statistically significant (P < 0.001) with the highest cross-validation consistency (10/10) and the best testing balanced accuracy (64.50%). In addition, based on the method to measure the departure from the additivity model, the synergy index (S) was 2.63 (1.09–6.38) and the attributable proportion due to interaction (AP) was 55.7% (21.4%–89.9%), which suggested that a common pathway may exist for these genes for nAMD. Those who carried CC for rs3793917 and TC/CC for rs1061170 were at the highest risk of nAMD (OR: 9.76, 95% CI: 4.65–20.51). Conclusions. Evidence that the joint effect that involved CFH and ARMS2/HTRA1 may contribute to the risk of neovascular AMD in Chinese population was obtained. Hindawi Publishing Corporation 2015 2015-03-25 /pmc/articles/PMC4389821/ /pubmed/25883802 http://dx.doi.org/10.1155/2015/821918 Text en Copyright © 2015 Kai Fang et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Fang, Kai
Gao, Pei
Tian, Jun
Qin, Xueying
Yu, Wenzhen
Li, Juan
Chen, Qing
Huang, Lvzhen
Chen, Dafang
Hu, Yonghua
Li, Xiaoxin
Joint Effect of CFH and ARMS2/HTRA1 Polymorphisms on Neovascular Age-Related Macular Degeneration in Chinese Population
title Joint Effect of CFH and ARMS2/HTRA1 Polymorphisms on Neovascular Age-Related Macular Degeneration in Chinese Population
title_full Joint Effect of CFH and ARMS2/HTRA1 Polymorphisms on Neovascular Age-Related Macular Degeneration in Chinese Population
title_fullStr Joint Effect of CFH and ARMS2/HTRA1 Polymorphisms on Neovascular Age-Related Macular Degeneration in Chinese Population
title_full_unstemmed Joint Effect of CFH and ARMS2/HTRA1 Polymorphisms on Neovascular Age-Related Macular Degeneration in Chinese Population
title_short Joint Effect of CFH and ARMS2/HTRA1 Polymorphisms on Neovascular Age-Related Macular Degeneration in Chinese Population
title_sort joint effect of cfh and arms2/htra1 polymorphisms on neovascular age-related macular degeneration in chinese population
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4389821/
https://www.ncbi.nlm.nih.gov/pubmed/25883802
http://dx.doi.org/10.1155/2015/821918
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