xiNET: Cross-link Network Maps With Residue Resolution

xiNET is a visualization tool for exploring cross-linking/mass spectrometry results. The interactive maps of the cross-link network that it generates are a type of node-link diagram. In these maps xiNET displays: (1) residue resolution positional information including linkage sites and linked peptid...

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Detalles Bibliográficos
Autores principales: Combe, Colin W., Fischer, Lutz, Rappsilber, Juri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The American Society for Biochemistry and Molecular Biology 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390258/
https://www.ncbi.nlm.nih.gov/pubmed/25648531
http://dx.doi.org/10.1074/mcp.O114.042259
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author Combe, Colin W.
Fischer, Lutz
Rappsilber, Juri
author_facet Combe, Colin W.
Fischer, Lutz
Rappsilber, Juri
author_sort Combe, Colin W.
collection PubMed
description xiNET is a visualization tool for exploring cross-linking/mass spectrometry results. The interactive maps of the cross-link network that it generates are a type of node-link diagram. In these maps xiNET displays: (1) residue resolution positional information including linkage sites and linked peptides; (2) all types of cross-linking reaction product; (3) ambiguous results; and, (4) additional sequence information such as domains. xiNET runs in a browser and exports vector graphics which can be edited in common drawing packages to create publication quality figures. Availability: xiNET is open source, released under the Apache version 2 license. Results can be viewed by uploading data to http://crosslinkviewer.org/ or by downloading the software from http://github.com/colin-combe/crosslink-viewer and running it locally.
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spelling pubmed-43902582015-04-17 xiNET: Cross-link Network Maps With Residue Resolution Combe, Colin W. Fischer, Lutz Rappsilber, Juri Mol Cell Proteomics Technological Innovation and Resources xiNET is a visualization tool for exploring cross-linking/mass spectrometry results. The interactive maps of the cross-link network that it generates are a type of node-link diagram. In these maps xiNET displays: (1) residue resolution positional information including linkage sites and linked peptides; (2) all types of cross-linking reaction product; (3) ambiguous results; and, (4) additional sequence information such as domains. xiNET runs in a browser and exports vector graphics which can be edited in common drawing packages to create publication quality figures. Availability: xiNET is open source, released under the Apache version 2 license. Results can be viewed by uploading data to http://crosslinkviewer.org/ or by downloading the software from http://github.com/colin-combe/crosslink-viewer and running it locally. The American Society for Biochemistry and Molecular Biology 2015-04 2015-02-03 /pmc/articles/PMC4390258/ /pubmed/25648531 http://dx.doi.org/10.1074/mcp.O114.042259 Text en © 2015 by The American Society for Biochemistry and Molecular Biology, Inc. Author's Choice—Final version full access.
spellingShingle Technological Innovation and Resources
Combe, Colin W.
Fischer, Lutz
Rappsilber, Juri
xiNET: Cross-link Network Maps With Residue Resolution
title xiNET: Cross-link Network Maps With Residue Resolution
title_full xiNET: Cross-link Network Maps With Residue Resolution
title_fullStr xiNET: Cross-link Network Maps With Residue Resolution
title_full_unstemmed xiNET: Cross-link Network Maps With Residue Resolution
title_short xiNET: Cross-link Network Maps With Residue Resolution
title_sort xinet: cross-link network maps with residue resolution
topic Technological Innovation and Resources
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390258/
https://www.ncbi.nlm.nih.gov/pubmed/25648531
http://dx.doi.org/10.1074/mcp.O114.042259
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