xiNET: Cross-link Network Maps With Residue Resolution
xiNET is a visualization tool for exploring cross-linking/mass spectrometry results. The interactive maps of the cross-link network that it generates are a type of node-link diagram. In these maps xiNET displays: (1) residue resolution positional information including linkage sites and linked peptid...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The American Society for Biochemistry and Molecular Biology
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390258/ https://www.ncbi.nlm.nih.gov/pubmed/25648531 http://dx.doi.org/10.1074/mcp.O114.042259 |
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author | Combe, Colin W. Fischer, Lutz Rappsilber, Juri |
author_facet | Combe, Colin W. Fischer, Lutz Rappsilber, Juri |
author_sort | Combe, Colin W. |
collection | PubMed |
description | xiNET is a visualization tool for exploring cross-linking/mass spectrometry results. The interactive maps of the cross-link network that it generates are a type of node-link diagram. In these maps xiNET displays: (1) residue resolution positional information including linkage sites and linked peptides; (2) all types of cross-linking reaction product; (3) ambiguous results; and, (4) additional sequence information such as domains. xiNET runs in a browser and exports vector graphics which can be edited in common drawing packages to create publication quality figures. Availability: xiNET is open source, released under the Apache version 2 license. Results can be viewed by uploading data to http://crosslinkviewer.org/ or by downloading the software from http://github.com/colin-combe/crosslink-viewer and running it locally. |
format | Online Article Text |
id | pubmed-4390258 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | The American Society for Biochemistry and Molecular Biology |
record_format | MEDLINE/PubMed |
spelling | pubmed-43902582015-04-17 xiNET: Cross-link Network Maps With Residue Resolution Combe, Colin W. Fischer, Lutz Rappsilber, Juri Mol Cell Proteomics Technological Innovation and Resources xiNET is a visualization tool for exploring cross-linking/mass spectrometry results. The interactive maps of the cross-link network that it generates are a type of node-link diagram. In these maps xiNET displays: (1) residue resolution positional information including linkage sites and linked peptides; (2) all types of cross-linking reaction product; (3) ambiguous results; and, (4) additional sequence information such as domains. xiNET runs in a browser and exports vector graphics which can be edited in common drawing packages to create publication quality figures. Availability: xiNET is open source, released under the Apache version 2 license. Results can be viewed by uploading data to http://crosslinkviewer.org/ or by downloading the software from http://github.com/colin-combe/crosslink-viewer and running it locally. The American Society for Biochemistry and Molecular Biology 2015-04 2015-02-03 /pmc/articles/PMC4390258/ /pubmed/25648531 http://dx.doi.org/10.1074/mcp.O114.042259 Text en © 2015 by The American Society for Biochemistry and Molecular Biology, Inc. Author's Choice—Final version full access. |
spellingShingle | Technological Innovation and Resources Combe, Colin W. Fischer, Lutz Rappsilber, Juri xiNET: Cross-link Network Maps With Residue Resolution |
title | xiNET: Cross-link Network Maps With Residue Resolution |
title_full | xiNET: Cross-link Network Maps With Residue Resolution |
title_fullStr | xiNET: Cross-link Network Maps With Residue Resolution |
title_full_unstemmed | xiNET: Cross-link Network Maps With Residue Resolution |
title_short | xiNET: Cross-link Network Maps With Residue Resolution |
title_sort | xinet: cross-link network maps with residue resolution |
topic | Technological Innovation and Resources |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390258/ https://www.ncbi.nlm.nih.gov/pubmed/25648531 http://dx.doi.org/10.1074/mcp.O114.042259 |
work_keys_str_mv | AT combecolinw xinetcrosslinknetworkmapswithresidueresolution AT fischerlutz xinetcrosslinknetworkmapswithresidueresolution AT rappsilberjuri xinetcrosslinknetworkmapswithresidueresolution |