Cargando…

Comparative Whole-Genome Analysis of Clinical Isolates Reveals Characteristic Architecture of Mycobacterium tuberculosis Pangenome

The tubercle complex consists of closely related mycobacterium species which appear to be variants of a single species. Comparative genome analysis of different strains could provide useful clues and insights into the genetic diversity of the species. We integrated genome assemblies of 96 strains fr...

Descripción completa

Detalles Bibliográficos
Autores principales:	Periwal, Vinita, Patowary, Ashok, Vellarikkal, Shamsudheen Karuthedath, Gupta, Anju, Singh, Meghna, Mittal, Ashish, Jeyapaul, Shamini, Chauhan, Rajendra Kumar, Singh, Ajay Vir, Singh, Pravin Kumar, Garg, Parul, Katoch, Viswa Mohan, Katoch, Kiran, Chauhan, Devendra Singh, Sivasubbu, Sridhar, Scaria, Vinod
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390332/ https://www.ncbi.nlm.nih.gov/pubmed/25853708 http://dx.doi.org/10.1371/journal.pone.0122979

Ejemplares similares

Draft Genome Sequence of a Clinical Isolate of Multidrug-Resistant Mycobacterium tuberculosis East African Indian Strain OSDD271
por: Karuthedath Vellarikkal, Shamsudheen, et al.
Publicado: (2013)

Draft Genome Sequence of an Extensively Drug-Resistant Mycobacterium tuberculosis Clinical Isolate of the Ural Strain OSDD493
por: Karuthedath Vellarikkal, Shamsudheen, et al.
Publicado: (2013)

Draft Genome Sequence of Multidrug-Resistant Mycobacterium tuberculosis Clinical Isolate OSDD515, Belonging to the Uganda I Genotype
por: Vellarikkal, Shamsudheen Karuthedath, et al.
Publicado: (2013)

Draft Genome Sequence of a Multidrug-Resistant Clinical Isolate of Mycobacterium tuberculosis Belonging to a Novel Spoligotype
por: Vellarikkal, Shamsudheen Karuthedath, et al.
Publicado: (2013)

De novo identification of viral pathogens from cell culture hologenomes
por: Patowary, Ashok, et al.
Publicado: (2012)

Human 45,X Fibroblast Transcriptome Reveals Distinct Differentially Expressed Genes Including Long Noncoding RNAs Potentially Associated with the Pathophysiology of Turner Syndrome
por: Rajpathak, Shriram N., et al.
Publicado: (2014)

Exome sequencing reveals a novel mutation, p.L325H, in the KRT5 gene associated with autosomal dominant Epidermolysis Bullosa Simplex Koebner type in a large family from western India
por: Vellarikkal, Shamsudheen K, et al.
Publicado: (2014)

Case Report: Whole exome sequencing identifies a novel frameshift insertion c.1325dupT (p.F442fsX2) in the tyrosine kinase domain of BTK gene in a young Indian individual with X-linked agammaglobulinemia
por: Rawat, Amit, et al.
Publicado: (2017)

A genome-wide map of circular RNAs in adult zebrafish
por: Sharma, Disha, et al.
Publicado: (2019)

A novel cathepsin D mutation in 2 siblings with late infantile neuronal ceroid lipofuscinosis
por: Thottath, Jineesh, et al.
Publicado: (2019)

Case Report: Application of whole exome sequencing for accurate diagnosis of rare syndromes of mineralocorticoid excess
por: Narayanan, Ranjit, et al.
Publicado: (2017)

Reverse Genetics Screen in Zebrafish Identifies a Role of miR-142a-3p in Vascular Development and Integrity
por: Lalwani, Mukesh Kumar, et al.
Publicado: (2012)

Case Report: Whole exome sequencing reveals a novel frameshift deletion mutation p.G2254fs in COL7A1 associated with autosomal recessive dystrophic epidermolysis bullosa
por: Karuthedath Vellarikkal, Shamsudheen, et al.
Publicado: (2016)

Current understanding on micro RNAs and its regulation in response to Mycobacterial infections
por: Singh, Pravin Kumar, et al.
Publicado: (2013)

RNA secondary structure profiling in zebrafish reveals unique regulatory features
por: Kaushik, Kriti, et al.
Publicado: (2018)

SAGE: a comprehensive resource of genetic variants integrating South Asian whole genomes and exomes
por: Hariprakash, Judith Mary, et al.
Publicado: (2018)

Application of IS1311 locus 2 PCR-REA assay for the specific detection of ‘Bison type’ Mycobacterium avium subspecies paratuberculosis isolates of Indian origin
por: Singh, Ajay Vir, et al.
Publicado: (2015)

Aptamer-Assisted Detection of the Altered Expression of Estrogen Receptor Alpha in Human Breast Cancer
por: Ahirwar, Rajesh, et al.
Publicado: (2016)

Analysis of expression profile of mce operon genes (mce1, mce2, mce3 operon) in different Mycobacterium tuberculosis isolates at different growth phases
por: Singh, Pratibha, et al.
Publicado: (2016)

A review on genetic algorithm: past, present, and future
por: Katoch, Sourabh, et al.
Publicado: (2020)

Chamber Specific Gene Expression Landscape of the Zebrafish Heart
por: Singh, Angom Ramcharan, et al.
Publicado: (2016)

Case Report: Whole exome sequencing identifies variation c.2308G>A p.E770K in RAG1 associated with B- T- NK+ severe combined immunodeficiency
por: Govindaraj, Geeta Madathil, et al.
Publicado: (2017)

Screening Currency Notes for Microbial Pathogens and Antibiotic Resistance Genes Using a Shotgun Metagenomic Approach
por: Jalali, Saakshi, et al.
Publicado: (2015)

Dynamic Expression of Long Non-Coding RNAs (lncRNAs) in Adult Zebrafish
por: Kaushik, Kriti, et al.
Publicado: (2013)

Case Report: Whole exome sequencing helps in accurate molecular diagnosis in siblings with a rare co-occurrence of paternally inherited 22q12 duplication and autosomal recessive non-syndromic ichthyosis.
por: Gupta, Aayush, et al.
Publicado: (2015)

Assessment of the N-PCR Assay in Diagnosis of Pleural Tuberculosis: Detection of M.tuberculosis in Pleural Fluid and Sputum Collected in Tandem
por: Kumar, Parameet, et al.
Publicado: (2010)

Mycobacterium lepromatosis Lepromatous Leprosy in US Citizen Who Traveled to Disease-Endemic Areas
por: Singh, Ajay Vir, et al.
Publicado: (2018)

Mycobacterium bovis-induced Human Tuberculosis in Central India
por: Singh, Ajay Vir, et al.
Publicado: (2018)

Dominant negative biologics normalise the tumour necrosis factor (TNF-α) induced angiogenesis which exploits the Mycobacterium tuberculosis dissemination
por: Davuluri, Kusuma Sai, et al.
Publicado: (2023)

Whole cell & culture filtrate proteins from prevalent genotypes of Mycobacterium tuberculosis provoke better antibody & T cell response than laboratory strain H(37)Rv
por: Kumar, Gavish, et al.
Publicado: (2012)

Erratum for Behera et al., Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India
por: Behera, Bijay Kumar, et al.
Publicado: (2015)

Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India
por: Behera, Bijay Kumar, et al.
Publicado: (2015)

Mycobacterium bovis induced human tuberculosis in India: Current status, challenges & opportunities
por: Singh, Ajay Vir, et al.
Publicado: (2022)

Current status of Mycobacterium avium subspecies paratuberculosis infection in animals & humans in India: What needs to be done?
por: Singh, Ajay Vir, et al.
Publicado: (2016)

High Resolution Methylome Map of Rat Indicates Role of Intragenic DNA Methylation in Identification of Coding Region
por: Sati, Satish, et al.
Publicado: (2012)

Atorvastatin Potentially Reduces Mycobacterial Severity through Its Action on Lipoarabinomannan and Drug Permeability in Granulomas
por: Davuluri, Kusuma Sai, et al.
Publicado: (2023)

Spectrum of clinical features and genetic variants in mevalonate kinase (MVK) gene of South Indian families suffering from Hyperimmunoglobulin D Syndrome
por: Govindaraj, Geeta Madathil, et al.
Publicado: (2020)

Intact Mycobacterium leprae Isolated from Placenta of a Pregnant Woman, China
por: Singh, Ajay Vir, et al.
Publicado: (2020)

Fecal Excretion of Mycobacterium leprae, Burkina Faso
por: Singh, Ajay Vir, et al.
Publicado: (2021)

Proximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brain
por: Bargaje, Rhishikesh, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_4njfpoomlqpbm66ujbjs7425in