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ICMA: an integrated cardiac modeling and analysis platform

Summary: ICMA, a software framework to create 3D finite element models of the left ventricle from cardiac ultrasound or magnetic resonance imaging (MRI) data, has been made available as an open-source code. The framework is hardware vendor independent and uses speckle tracking (endocardial border de...

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Autores principales: Hussan, Jagir R., Hunter, Peter J., Gladding, Patrick A., Greenberg, Neil, Christie, Richard, Wu, Alan, Sorby, Hugh, Thomas, James D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4393521/
https://www.ncbi.nlm.nih.gov/pubmed/25481009
http://dx.doi.org/10.1093/bioinformatics/btu809
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author Hussan, Jagir R.
Hunter, Peter J.
Gladding, Patrick A.
Greenberg, Neil
Christie, Richard
Wu, Alan
Sorby, Hugh
Thomas, James D.
author_facet Hussan, Jagir R.
Hunter, Peter J.
Gladding, Patrick A.
Greenberg, Neil
Christie, Richard
Wu, Alan
Sorby, Hugh
Thomas, James D.
author_sort Hussan, Jagir R.
collection PubMed
description Summary: ICMA, a software framework to create 3D finite element models of the left ventricle from cardiac ultrasound or magnetic resonance imaging (MRI) data, has been made available as an open-source code. The framework is hardware vendor independent and uses speckle tracking (endocardial border detection) on ultrasound (MRI) imaging data in the form of DICOM. Standard American Heart Association segment-based strain analysis can be performed using a browser-based interface. The speckle tracking, border detection and model fitting methods are implemented in C++ using open-source tools. They are wrapped as web services and orchestrated via a JBOSS-based application server. Availability and implementation: The source code for ICMA is freely available under MPL 1.1 or GPL 2.0 or LGPL 2.1 license at https://github.com/ABI-Software-Laboratory/ICMA and a standalone virtual machine at http://goo.gl/M4lJKH for download. Contact: r.jagir@auckland.ac.nz Supplementary information: Supplementary materials are available at Bioinformatics online.
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spelling pubmed-43935212015-04-13 ICMA: an integrated cardiac modeling and analysis platform Hussan, Jagir R. Hunter, Peter J. Gladding, Patrick A. Greenberg, Neil Christie, Richard Wu, Alan Sorby, Hugh Thomas, James D. Bioinformatics Applications Notes Summary: ICMA, a software framework to create 3D finite element models of the left ventricle from cardiac ultrasound or magnetic resonance imaging (MRI) data, has been made available as an open-source code. The framework is hardware vendor independent and uses speckle tracking (endocardial border detection) on ultrasound (MRI) imaging data in the form of DICOM. Standard American Heart Association segment-based strain analysis can be performed using a browser-based interface. The speckle tracking, border detection and model fitting methods are implemented in C++ using open-source tools. They are wrapped as web services and orchestrated via a JBOSS-based application server. Availability and implementation: The source code for ICMA is freely available under MPL 1.1 or GPL 2.0 or LGPL 2.1 license at https://github.com/ABI-Software-Laboratory/ICMA and a standalone virtual machine at http://goo.gl/M4lJKH for download. Contact: r.jagir@auckland.ac.nz Supplementary information: Supplementary materials are available at Bioinformatics online. Oxford University Press 2015-04-15 2014-12-06 /pmc/articles/PMC4393521/ /pubmed/25481009 http://dx.doi.org/10.1093/bioinformatics/btu809 Text en © The Author 2014. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Hussan, Jagir R.
Hunter, Peter J.
Gladding, Patrick A.
Greenberg, Neil
Christie, Richard
Wu, Alan
Sorby, Hugh
Thomas, James D.
ICMA: an integrated cardiac modeling and analysis platform
title ICMA: an integrated cardiac modeling and analysis platform
title_full ICMA: an integrated cardiac modeling and analysis platform
title_fullStr ICMA: an integrated cardiac modeling and analysis platform
title_full_unstemmed ICMA: an integrated cardiac modeling and analysis platform
title_short ICMA: an integrated cardiac modeling and analysis platform
title_sort icma: an integrated cardiac modeling and analysis platform
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4393521/
https://www.ncbi.nlm.nih.gov/pubmed/25481009
http://dx.doi.org/10.1093/bioinformatics/btu809
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