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GSDS 2.0: an upgraded gene feature visualization server
Summary: Visualizing genes’ structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4393523/ https://www.ncbi.nlm.nih.gov/pubmed/25504850 http://dx.doi.org/10.1093/bioinformatics/btu817 |
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author | Hu, Bo Jin, Jinpu Guo, An-Yuan Zhang, He Luo, Jingchu Gao, Ge |
author_facet | Hu, Bo Jin, Jinpu Guo, An-Yuan Zhang, He Luo, Jingchu Gao, Ge |
author_sort | Hu, Bo |
collection | PubMed |
description | Summary: Visualizing genes’ structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading. Availability and implementation: Web server and source code are freely available at http://gsds.cbi.pku.edu.cn. Contact: gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cn Supplementary information: Supplementary data are available at Bioinformatics online. |
format | Online Article Text |
id | pubmed-4393523 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-43935232015-04-13 GSDS 2.0: an upgraded gene feature visualization server Hu, Bo Jin, Jinpu Guo, An-Yuan Zhang, He Luo, Jingchu Gao, Ge Bioinformatics Applications Notes Summary: Visualizing genes’ structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading. Availability and implementation: Web server and source code are freely available at http://gsds.cbi.pku.edu.cn. Contact: gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cn Supplementary information: Supplementary data are available at Bioinformatics online. Oxford University Press 2015-04-15 2014-12-10 /pmc/articles/PMC4393523/ /pubmed/25504850 http://dx.doi.org/10.1093/bioinformatics/btu817 Text en © The Author 2014. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Notes Hu, Bo Jin, Jinpu Guo, An-Yuan Zhang, He Luo, Jingchu Gao, Ge GSDS 2.0: an upgraded gene feature visualization server |
title | GSDS 2.0: an upgraded gene feature visualization server |
title_full | GSDS 2.0: an upgraded gene feature visualization server |
title_fullStr | GSDS 2.0: an upgraded gene feature visualization server |
title_full_unstemmed | GSDS 2.0: an upgraded gene feature visualization server |
title_short | GSDS 2.0: an upgraded gene feature visualization server |
title_sort | gsds 2.0: an upgraded gene feature visualization server |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4393523/ https://www.ncbi.nlm.nih.gov/pubmed/25504850 http://dx.doi.org/10.1093/bioinformatics/btu817 |
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