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PhIN: A Protein Pharmacology Interaction Network Database

Network pharmacology is a new and hot concept in drug discovery for its ability to investigate the complexity of polypharmacology, and becomes more and more important in drug development. Here we report a protein pharmacology interaction network database (PhIN), aiming to assist multitarget drug dis...

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Detalles Bibliográficos
Autores principales: Wang, Z, Li, J, Dang, R, Liang, L, Lin, J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BlackWell Publishing Ltd 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4394615/
https://www.ncbi.nlm.nih.gov/pubmed/26225242
http://dx.doi.org/10.1002/psp4.25
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author Wang, Z
Li, J
Dang, R
Liang, L
Lin, J
author_facet Wang, Z
Li, J
Dang, R
Liang, L
Lin, J
author_sort Wang, Z
collection PubMed
description Network pharmacology is a new and hot concept in drug discovery for its ability to investigate the complexity of polypharmacology, and becomes more and more important in drug development. Here we report a protein pharmacology interaction network database (PhIN), aiming to assist multitarget drug discovery by providing comprehensive and flexible network pharmacology analysis. Overall, PhIN contains 1,126,060 target–target interaction pairs in terms of shared compounds and 3,428,020 pairs in terms of shared scaffolds, which involve 12,419,700 activity data, 9,414 targets, 314 viral targets, 652 pathways, 1,359,400 compounds, and 309,556 scaffolds. Using PhIN, users can obtain interacting target networks within or across human pathways, between human and virus, by defining the number of shared compounds or scaffolds under an activity cutoff. We expect PhIN to be a useful tool for multitarget drug development. PhIN is freely available at http://cadd.pharmacy.nankai.edu.cn/phin/.
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spelling pubmed-43946152015-04-20 PhIN: A Protein Pharmacology Interaction Network Database Wang, Z Li, J Dang, R Liang, L Lin, J CPT Pharmacometrics Syst Pharmacol Original Articles Network pharmacology is a new and hot concept in drug discovery for its ability to investigate the complexity of polypharmacology, and becomes more and more important in drug development. Here we report a protein pharmacology interaction network database (PhIN), aiming to assist multitarget drug discovery by providing comprehensive and flexible network pharmacology analysis. Overall, PhIN contains 1,126,060 target–target interaction pairs in terms of shared compounds and 3,428,020 pairs in terms of shared scaffolds, which involve 12,419,700 activity data, 9,414 targets, 314 viral targets, 652 pathways, 1,359,400 compounds, and 309,556 scaffolds. Using PhIN, users can obtain interacting target networks within or across human pathways, between human and virus, by defining the number of shared compounds or scaffolds under an activity cutoff. We expect PhIN to be a useful tool for multitarget drug development. PhIN is freely available at http://cadd.pharmacy.nankai.edu.cn/phin/. BlackWell Publishing Ltd 2015-03 2015-03-18 /pmc/articles/PMC4394615/ /pubmed/26225242 http://dx.doi.org/10.1002/psp4.25 Text en © 2015 The Authors CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals, Inc. on behalf of American Society for Clinical Pharmacology and Therapeutics http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Original Articles
Wang, Z
Li, J
Dang, R
Liang, L
Lin, J
PhIN: A Protein Pharmacology Interaction Network Database
title PhIN: A Protein Pharmacology Interaction Network Database
title_full PhIN: A Protein Pharmacology Interaction Network Database
title_fullStr PhIN: A Protein Pharmacology Interaction Network Database
title_full_unstemmed PhIN: A Protein Pharmacology Interaction Network Database
title_short PhIN: A Protein Pharmacology Interaction Network Database
title_sort phin: a protein pharmacology interaction network database
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4394615/
https://www.ncbi.nlm.nih.gov/pubmed/26225242
http://dx.doi.org/10.1002/psp4.25
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