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Power analysis for generalized linear mixed models in ecology and evolution

1. ‘Will my study answer my research question?’ is the most fundamental question a researcher can ask when designing a study, yet when phrased in statistical terms – ‘What is the power of my study?’ or ‘How precise will my parameter estimate be?’ – few researchers in ecology and evolution (EE) try t...

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Autores principales: Johnson, Paul C D, Barry, Sarah J E, Ferguson, Heather M, Müller, Pie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BlackWell Publishing Ltd 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4394709/
https://www.ncbi.nlm.nih.gov/pubmed/25893088
http://dx.doi.org/10.1111/2041-210X.12306
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author Johnson, Paul C D
Barry, Sarah J E
Ferguson, Heather M
Müller, Pie
author_facet Johnson, Paul C D
Barry, Sarah J E
Ferguson, Heather M
Müller, Pie
author_sort Johnson, Paul C D
collection PubMed
description 1. ‘Will my study answer my research question?’ is the most fundamental question a researcher can ask when designing a study, yet when phrased in statistical terms – ‘What is the power of my study?’ or ‘How precise will my parameter estimate be?’ – few researchers in ecology and evolution (EE) try to answer it, despite the detrimental consequences of performing under- or over-powered research. We suggest that this reluctance is due in large part to the unsuitability of simple methods of power analysis (broadly defined as any attempt to quantify prospectively the ‘informativeness’ of a study) for the complex models commonly used in EE research. With the aim of encouraging the use of power analysis, we present simulation from generalized linear mixed models (GLMMs) as a flexible and accessible approach to power analysis that can account for random effects, overdispersion and diverse response distributions. 2. We illustrate the benefits of simulation-based power analysis in two research scenarios: estimating the precision of a survey to estimate tick burdens on grouse chicks and estimating the power of a trial to compare the efficacy of insecticide-treated nets in malaria mosquito control. We provide a freely available R function, sim.glmm, for simulating from GLMMs. 3. Analysis of simulated data revealed that the effects of accounting for realistic levels of random effects and overdispersion on power and precision estimates were substantial, with correspondingly severe implications for study design in the form of up to fivefold increases in sampling effort. We also show the utility of simulations for identifying scenarios where GLMM-fitting methods can perform poorly. 4. These results illustrate the inadequacy of standard analytical power analysis methods and the flexibility of simulation-based power analysis for GLMMs. The wider use of these methods should contribute to improving the quality of study design in EE.
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spelling pubmed-43947092015-04-17 Power analysis for generalized linear mixed models in ecology and evolution Johnson, Paul C D Barry, Sarah J E Ferguson, Heather M Müller, Pie Methods Ecol Evol Statistical Methods 1. ‘Will my study answer my research question?’ is the most fundamental question a researcher can ask when designing a study, yet when phrased in statistical terms – ‘What is the power of my study?’ or ‘How precise will my parameter estimate be?’ – few researchers in ecology and evolution (EE) try to answer it, despite the detrimental consequences of performing under- or over-powered research. We suggest that this reluctance is due in large part to the unsuitability of simple methods of power analysis (broadly defined as any attempt to quantify prospectively the ‘informativeness’ of a study) for the complex models commonly used in EE research. With the aim of encouraging the use of power analysis, we present simulation from generalized linear mixed models (GLMMs) as a flexible and accessible approach to power analysis that can account for random effects, overdispersion and diverse response distributions. 2. We illustrate the benefits of simulation-based power analysis in two research scenarios: estimating the precision of a survey to estimate tick burdens on grouse chicks and estimating the power of a trial to compare the efficacy of insecticide-treated nets in malaria mosquito control. We provide a freely available R function, sim.glmm, for simulating from GLMMs. 3. Analysis of simulated data revealed that the effects of accounting for realistic levels of random effects and overdispersion on power and precision estimates were substantial, with correspondingly severe implications for study design in the form of up to fivefold increases in sampling effort. We also show the utility of simulations for identifying scenarios where GLMM-fitting methods can perform poorly. 4. These results illustrate the inadequacy of standard analytical power analysis methods and the flexibility of simulation-based power analysis for GLMMs. The wider use of these methods should contribute to improving the quality of study design in EE. BlackWell Publishing Ltd 2015-02 2014-12-06 /pmc/articles/PMC4394709/ /pubmed/25893088 http://dx.doi.org/10.1111/2041-210X.12306 Text en © 2014 The Authors. Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society. http://creativecommons.org/licenses/by-nc/4.0/ This is an open access article under the terms of the Creative Commons Attribution-NonCommercial License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Statistical Methods
Johnson, Paul C D
Barry, Sarah J E
Ferguson, Heather M
Müller, Pie
Power analysis for generalized linear mixed models in ecology and evolution
title Power analysis for generalized linear mixed models in ecology and evolution
title_full Power analysis for generalized linear mixed models in ecology and evolution
title_fullStr Power analysis for generalized linear mixed models in ecology and evolution
title_full_unstemmed Power analysis for generalized linear mixed models in ecology and evolution
title_short Power analysis for generalized linear mixed models in ecology and evolution
title_sort power analysis for generalized linear mixed models in ecology and evolution
topic Statistical Methods
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4394709/
https://www.ncbi.nlm.nih.gov/pubmed/25893088
http://dx.doi.org/10.1111/2041-210X.12306
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