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Mathematical and computational modeling in biology at multiple scales
A variety of topics are reviewed in the area of mathematical and computational modeling in biology, covering the range of scales from populations of organisms to electrons in atoms. The use of maximum entropy as an inference tool in the fields of biology and drug discovery is discussed. Mathematical...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4396153/ https://www.ncbi.nlm.nih.gov/pubmed/25542608 http://dx.doi.org/10.1186/1742-4682-11-52 |
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author | Tuszynski, Jack A Winter, Philip White, Diana Tseng, Chih-Yuan Sahu, Kamlesh K Gentile, Francesco Spasevska, Ivana Omar, Sara Ibrahim Nayebi, Niloofar Churchill, Cassandra DM Klobukowski, Mariusz El-Magd, Rabab M Abou |
author_facet | Tuszynski, Jack A Winter, Philip White, Diana Tseng, Chih-Yuan Sahu, Kamlesh K Gentile, Francesco Spasevska, Ivana Omar, Sara Ibrahim Nayebi, Niloofar Churchill, Cassandra DM Klobukowski, Mariusz El-Magd, Rabab M Abou |
author_sort | Tuszynski, Jack A |
collection | PubMed |
description | A variety of topics are reviewed in the area of mathematical and computational modeling in biology, covering the range of scales from populations of organisms to electrons in atoms. The use of maximum entropy as an inference tool in the fields of biology and drug discovery is discussed. Mathematical and computational methods and models in the areas of epidemiology, cell physiology and cancer are surveyed. The technique of molecular dynamics is covered, with special attention to force fields for protein simulations and methods for the calculation of solvation free energies. The utility of quantum mechanical methods in biophysical and biochemical modeling is explored. The field of computational enzymology is examined. |
format | Online Article Text |
id | pubmed-4396153 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-43961532015-04-14 Mathematical and computational modeling in biology at multiple scales Tuszynski, Jack A Winter, Philip White, Diana Tseng, Chih-Yuan Sahu, Kamlesh K Gentile, Francesco Spasevska, Ivana Omar, Sara Ibrahim Nayebi, Niloofar Churchill, Cassandra DM Klobukowski, Mariusz El-Magd, Rabab M Abou Theor Biol Med Model Review A variety of topics are reviewed in the area of mathematical and computational modeling in biology, covering the range of scales from populations of organisms to electrons in atoms. The use of maximum entropy as an inference tool in the fields of biology and drug discovery is discussed. Mathematical and computational methods and models in the areas of epidemiology, cell physiology and cancer are surveyed. The technique of molecular dynamics is covered, with special attention to force fields for protein simulations and methods for the calculation of solvation free energies. The utility of quantum mechanical methods in biophysical and biochemical modeling is explored. The field of computational enzymology is examined. BioMed Central 2014-12-27 /pmc/articles/PMC4396153/ /pubmed/25542608 http://dx.doi.org/10.1186/1742-4682-11-52 Text en © Tuszynski et al.; licensee BioMed Central. 2014 This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Review Tuszynski, Jack A Winter, Philip White, Diana Tseng, Chih-Yuan Sahu, Kamlesh K Gentile, Francesco Spasevska, Ivana Omar, Sara Ibrahim Nayebi, Niloofar Churchill, Cassandra DM Klobukowski, Mariusz El-Magd, Rabab M Abou Mathematical and computational modeling in biology at multiple scales |
title | Mathematical and computational modeling in biology at multiple scales |
title_full | Mathematical and computational modeling in biology at multiple scales |
title_fullStr | Mathematical and computational modeling in biology at multiple scales |
title_full_unstemmed | Mathematical and computational modeling in biology at multiple scales |
title_short | Mathematical and computational modeling in biology at multiple scales |
title_sort | mathematical and computational modeling in biology at multiple scales |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4396153/ https://www.ncbi.nlm.nih.gov/pubmed/25542608 http://dx.doi.org/10.1186/1742-4682-11-52 |
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