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Visualizing the Indefinable: Three-Dimensional Complexity of ‘Infectious Diseases’

BACKGROUND: The words ‘infection’ and ‘inflammation’ lack specific definitions. Here, such words are not defined. Instead, the ability to visualize host-microbial interactions was explored. METHODS: Leukocyte differential counts and four bacterial species (Staphylococcus aureus, Streptococcus dysgal...

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Autores principales: Leitner, Gabriel, Blum, Shlomo E., Rivas, Ariel L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4397090/
https://www.ncbi.nlm.nih.gov/pubmed/25875169
http://dx.doi.org/10.1371/journal.pone.0123674
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author Leitner, Gabriel
Blum, Shlomo E.
Rivas, Ariel L.
author_facet Leitner, Gabriel
Blum, Shlomo E.
Rivas, Ariel L.
author_sort Leitner, Gabriel
collection PubMed
description BACKGROUND: The words ‘infection’ and ‘inflammation’ lack specific definitions. Here, such words are not defined. Instead, the ability to visualize host-microbial interactions was explored. METHODS: Leukocyte differential counts and four bacterial species (Staphylococcus aureus, Streptococcus dysgalactiae, Staphylococcus chromogenes, and Escherichia coli) were determined or isolated in a cross-sectional and randomized study conducted with 611 bovine milk samples. Two paradigms were evaluated: (i) the classic one, which measures non-structured (count or percent) data; and (ii) a method that, using complex data structures, detects and differentiates three-dimensional (3D) interactions among lymphocytes (L), macrophages (M), and neutrophils (N). RESULTS: Classic analyses failed to differentiate bacterial-positive (B+) from –negative (B−) observations: B− and B+ data overlapped, even when statistical significance was achieved. In contrast, the alternative approach showed distinct patterns, such as perpendicular data inflections, which discriminated microbial-negative/mononuclear cell-predominating (MCP) from microbial-positive/phagocyte-predominating (PP) subsets. Two PP subcategories were distinguished, as well as PP/culture-negative (false-negative) and MCP/culture-positive (false-positive) observations. In 3D space, MCP and PP subsets were perpendicular to one another, displaying ≥91% specificity or sensitivity. Findings supported five inferences: (i) disease is not always ruled out by negative bacterial tests; (ii) low total cell counts can coexist with high phagocyte percents; (iii) neither positive bacterial isolation nor high cell counts always coincide with PP profiles; (iv) statistical significance is not synonymous with discrimination; and (v) hidden relationships cannot be detected when simple (non-structured) data formats are used and statistical analyses are performed before data subsets are identified, but can be uncovered when complexity is investigated. CONCLUSIONS: Pattern recognition-based assessments can detect host-microbial interactions usually unobserved. Such cutoff-free, confidence interval-free, gold standard-free approaches provide interpretable information on complex entities, such as ‘infection’ and ‘inflammation’, even without definitions. To investigate disease dynamics, combinations of observational and experimental longitudinal studies, on human and non-human infections, are recommended.
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spelling pubmed-43970902015-04-21 Visualizing the Indefinable: Three-Dimensional Complexity of ‘Infectious Diseases’ Leitner, Gabriel Blum, Shlomo E. Rivas, Ariel L. PLoS One Research Article BACKGROUND: The words ‘infection’ and ‘inflammation’ lack specific definitions. Here, such words are not defined. Instead, the ability to visualize host-microbial interactions was explored. METHODS: Leukocyte differential counts and four bacterial species (Staphylococcus aureus, Streptococcus dysgalactiae, Staphylococcus chromogenes, and Escherichia coli) were determined or isolated in a cross-sectional and randomized study conducted with 611 bovine milk samples. Two paradigms were evaluated: (i) the classic one, which measures non-structured (count or percent) data; and (ii) a method that, using complex data structures, detects and differentiates three-dimensional (3D) interactions among lymphocytes (L), macrophages (M), and neutrophils (N). RESULTS: Classic analyses failed to differentiate bacterial-positive (B+) from –negative (B−) observations: B− and B+ data overlapped, even when statistical significance was achieved. In contrast, the alternative approach showed distinct patterns, such as perpendicular data inflections, which discriminated microbial-negative/mononuclear cell-predominating (MCP) from microbial-positive/phagocyte-predominating (PP) subsets. Two PP subcategories were distinguished, as well as PP/culture-negative (false-negative) and MCP/culture-positive (false-positive) observations. In 3D space, MCP and PP subsets were perpendicular to one another, displaying ≥91% specificity or sensitivity. Findings supported five inferences: (i) disease is not always ruled out by negative bacterial tests; (ii) low total cell counts can coexist with high phagocyte percents; (iii) neither positive bacterial isolation nor high cell counts always coincide with PP profiles; (iv) statistical significance is not synonymous with discrimination; and (v) hidden relationships cannot be detected when simple (non-structured) data formats are used and statistical analyses are performed before data subsets are identified, but can be uncovered when complexity is investigated. CONCLUSIONS: Pattern recognition-based assessments can detect host-microbial interactions usually unobserved. Such cutoff-free, confidence interval-free, gold standard-free approaches provide interpretable information on complex entities, such as ‘infection’ and ‘inflammation’, even without definitions. To investigate disease dynamics, combinations of observational and experimental longitudinal studies, on human and non-human infections, are recommended. Public Library of Science 2015-04-14 /pmc/articles/PMC4397090/ /pubmed/25875169 http://dx.doi.org/10.1371/journal.pone.0123674 Text en © 2015 Leitner et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Leitner, Gabriel
Blum, Shlomo E.
Rivas, Ariel L.
Visualizing the Indefinable: Three-Dimensional Complexity of ‘Infectious Diseases’
title Visualizing the Indefinable: Three-Dimensional Complexity of ‘Infectious Diseases’
title_full Visualizing the Indefinable: Three-Dimensional Complexity of ‘Infectious Diseases’
title_fullStr Visualizing the Indefinable: Three-Dimensional Complexity of ‘Infectious Diseases’
title_full_unstemmed Visualizing the Indefinable: Three-Dimensional Complexity of ‘Infectious Diseases’
title_short Visualizing the Indefinable: Three-Dimensional Complexity of ‘Infectious Diseases’
title_sort visualizing the indefinable: three-dimensional complexity of ‘infectious diseases’
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4397090/
https://www.ncbi.nlm.nih.gov/pubmed/25875169
http://dx.doi.org/10.1371/journal.pone.0123674
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