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Linear Mixed-Effects Models to Describe Individual Tree Crown Width for China-Fir in Fujian Province, Southeast China
A multiple linear model was developed for individual tree crown width of Cunninghamia lanceolata (Lamb.) Hook in Fujian province, southeast China. Data were obtained from 55 sample plots of pure China-fir plantation stands. An Ordinary Linear Least Squares (OLS) regression was used to establish the...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4398382/ https://www.ncbi.nlm.nih.gov/pubmed/25876178 http://dx.doi.org/10.1371/journal.pone.0122257 |
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author | Hao, Xu Yujun, Sun Xinjie, Wang Jin, Wang Yao, Fu |
author_facet | Hao, Xu Yujun, Sun Xinjie, Wang Jin, Wang Yao, Fu |
author_sort | Hao, Xu |
collection | PubMed |
description | A multiple linear model was developed for individual tree crown width of Cunninghamia lanceolata (Lamb.) Hook in Fujian province, southeast China. Data were obtained from 55 sample plots of pure China-fir plantation stands. An Ordinary Linear Least Squares (OLS) regression was used to establish the crown width model. To adjust for correlations between observations from the same sample plots, we developed one level linear mixed-effects (LME) models based on the multiple linear model, which take into account the random effects of plots. The best random effects combinations for the LME models were determined by the Akaike’s information criterion, the Bayesian information criterion and the -2logarithm likelihood. Heteroscedasticity was reduced by three residual variance functions: the power function, the exponential function and the constant plus power function. The spatial correlation was modeled by three correlation structures: the first-order autoregressive structure [AR(1)], a combination of first-order autoregressive and moving average structures [ARMA(1,1)], and the compound symmetry structure (CS). Then, the LME model was compared to the multiple linear model using the absolute mean residual (AMR), the root mean square error (RMSE), and the adjusted coefficient of determination (adj-R (2)). For individual tree crown width models, the one level LME model showed the best performance. An independent dataset was used to test the performance of the models and to demonstrate the advantage of calibrating LME models. |
format | Online Article Text |
id | pubmed-4398382 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-43983822015-04-21 Linear Mixed-Effects Models to Describe Individual Tree Crown Width for China-Fir in Fujian Province, Southeast China Hao, Xu Yujun, Sun Xinjie, Wang Jin, Wang Yao, Fu PLoS One Research Article A multiple linear model was developed for individual tree crown width of Cunninghamia lanceolata (Lamb.) Hook in Fujian province, southeast China. Data were obtained from 55 sample plots of pure China-fir plantation stands. An Ordinary Linear Least Squares (OLS) regression was used to establish the crown width model. To adjust for correlations between observations from the same sample plots, we developed one level linear mixed-effects (LME) models based on the multiple linear model, which take into account the random effects of plots. The best random effects combinations for the LME models were determined by the Akaike’s information criterion, the Bayesian information criterion and the -2logarithm likelihood. Heteroscedasticity was reduced by three residual variance functions: the power function, the exponential function and the constant plus power function. The spatial correlation was modeled by three correlation structures: the first-order autoregressive structure [AR(1)], a combination of first-order autoregressive and moving average structures [ARMA(1,1)], and the compound symmetry structure (CS). Then, the LME model was compared to the multiple linear model using the absolute mean residual (AMR), the root mean square error (RMSE), and the adjusted coefficient of determination (adj-R (2)). For individual tree crown width models, the one level LME model showed the best performance. An independent dataset was used to test the performance of the models and to demonstrate the advantage of calibrating LME models. Public Library of Science 2015-04-15 /pmc/articles/PMC4398382/ /pubmed/25876178 http://dx.doi.org/10.1371/journal.pone.0122257 Text en © 2015 Hao et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Hao, Xu Yujun, Sun Xinjie, Wang Jin, Wang Yao, Fu Linear Mixed-Effects Models to Describe Individual Tree Crown Width for China-Fir in Fujian Province, Southeast China |
title | Linear Mixed-Effects Models to Describe Individual Tree Crown Width for China-Fir in Fujian Province, Southeast China |
title_full | Linear Mixed-Effects Models to Describe Individual Tree Crown Width for China-Fir in Fujian Province, Southeast China |
title_fullStr | Linear Mixed-Effects Models to Describe Individual Tree Crown Width for China-Fir in Fujian Province, Southeast China |
title_full_unstemmed | Linear Mixed-Effects Models to Describe Individual Tree Crown Width for China-Fir in Fujian Province, Southeast China |
title_short | Linear Mixed-Effects Models to Describe Individual Tree Crown Width for China-Fir in Fujian Province, Southeast China |
title_sort | linear mixed-effects models to describe individual tree crown width for china-fir in fujian province, southeast china |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4398382/ https://www.ncbi.nlm.nih.gov/pubmed/25876178 http://dx.doi.org/10.1371/journal.pone.0122257 |
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