Cargando…

SNPchiMp v.3: integrating and standardizing single nucleotide polymorphism data for livestock species

BACKGROUND: In recent years, the use of genomic information in livestock species for genetic improvement, association studies and many other fields has become routine. In order to accommodate different market requirements in terms of genotyping cost, manufacturers of single nucleotide polymorphism (...

Descripción completa

Detalles Bibliográficos
Autores principales:	Nicolazzi, Ezequiel L, Caprera, Andrea, Nazzicari, Nelson, Cozzi, Paolo, Strozzi, Francesco, Lawley, Cindy, Pirani, Ali, Soans, Chandrasen, Brew, Fiona, Jorjani, Hossein, Evans, Gary, Simpson, Barry, Tosser-Klopp, Gwenola, Brauning, Rudiger, Williams, John L, Stella, Alessandra
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4399246/ https://www.ncbi.nlm.nih.gov/pubmed/25881165 http://dx.doi.org/10.1186/s12864-015-1497-1

Ejemplares similares

SNPchiMp: a database to disentangle the SNPchip jungle in bovine livestock
por: Nicolazzi, Ezequiel Luis, et al.
Publicado: (2014)

Functional SNP panel for parentage assessment and assignment in worldwide goat breeds
por: Talenti, Andrea, et al.
Publicado: (2018)

Gene network reconstruction from microarray data
por: Jaffrezic, Florence, et al.
Publicado: (2009)

AdaptMap: exploring goat diversity and adaptation
por: Stella, Alessandra, et al.
Publicado: (2018)

A practical approach to detect ancestral haplotypes in livestock populations
por: Sánchez-Molano, Enrique, et al.
Publicado: (2016)

SNPConvert: SNP Array Standardization and Integration in Livestock Species
por: Nicolazzi, Ezequiel Luis, et al.
Publicado: (2016)

Functional study and regional mapping of 44 hormono-regulated genes isolated from a porcine granulosa cell library
por: Tosser-Klopp, Gwenola, et al.
Publicado: (2001)

Challenges and opportunities in genetic improvement of local livestock breeds
por: Biscarini, Filippo, et al.
Publicado: (2015)

Variant discovery in the sheep milk transcriptome using RNA sequencing
por: Suárez-Vega, Aroa, et al.
Publicado: (2017)

Comprehensive RNA-Seq profiling to evaluate lactating sheep mammary gland transcriptome
por: Suárez-Vega, Aroa, et al.
Publicado: (2016)

Expressed sequence tags for genes: a review
por: Hatey, François, et al.
Publicado: (1998)

Genome Wide Association Study Identifies New Loci Associated with Undesired Coat Color Phenotypes in Saanen Goats
por: Martin, Pauline Marie, et al.
Publicado: (2016)

Correction: Genome Wide Association Study Identifies New Loci Associated with Undesired Coat Color Phenotypes in Saanen Goats
por: Martin, Pauline Marie, et al.
Publicado: (2017)

Alternative methods improve the accuracy of genomic prediction using information from a causal point mutation in a dairy sheep model
por: Oget, Claire, et al.
Publicado: (2019)

Characterization and Comparative Analysis of the Milk Transcriptome in Two Dairy Sheep Breeds using RNA Sequencing
por: Suárez-Vega, Aroa, et al.
Publicado: (2015)

Pathway results from the chicken data set using GOTM, Pathway Studio and Ingenuity softwares
por: Bonnet, Agnès, et al.
Publicado: (2009)

RumimiR: a detailed microRNA database focused on ruminant species
por: Bourdon, Céline, et al.
Publicado: (2019)

Combining GWAS and RNA-Seq Approaches for Detection of the Causal Mutation for Hereditary Junctional Epidermolysis Bullosa in Sheep
por: Suárez-Vega, Aroa, et al.
Publicado: (2015)

Genetic diversity and historical demography of underutilised goat breeds in North-Western Europe
por: Manunza, Arianna, et al.
Publicado: (2023)

Beyond the genome: a perspective on the use of DNA methylation profiles as a tool for the livestock industry
por: Clarke, Shannon, et al.
Publicado: (2021)

Selection Signatures in Worldwide Sheep Populations
por: Fariello, Maria-Ines, et al.
Publicado: (2014)

Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep
por: Rochus, Christina Marie, et al.
Publicado: (2018)

Genome wide scan for somatic cell counts in holstein bulls
por: Minozzi, Giulietta, et al.
Publicado: (2011)

A pig multi-tissue normalised cDNA library: large-scale sequencing, cluster analysis and 9K micro-array resource generation
por: Bonnet, Agnès, et al.
Publicado: (2008)

The ruminal microbiome associated with methane emissions from ruminant livestock
por: Tapio, Ilma, et al.
Publicado: (2017)

A validation study of loci associated with mastitis resistance in two French dairy sheep breeds
por: Oget, Claire, et al.
Publicado: (2019)

Transcriptome variation in response to gastrointestinal nematode infection in goats
por: Aboshady, Hadeer M., et al.
Publicado: (2019)

The other side of comparative genomics: genes with no orthologs between the cow and other mammalian species
por: Mazza, Raffaele, et al.
Publicado: (2009)

The SNP-Based Profiling of Montecristo Feral Goat Populations Reveals a History of Isolation, Bottlenecks, and the Effects of Management
por: Somenzi, Elisa, et al.
Publicado: (2022)

Signatures of selection and environmental adaptation across the goat genome post-domestication
por: Bertolini, Francesca, et al.
Publicado: (2018)

Genome-Wide Association Studies Identify Two Novel BMP15 Mutations Responsible for an Atypical Hyperprolificacy Phenotype in Sheep
por: Demars, Julie, et al.
Publicado: (2013)

Transcriptome profiling of sheep granulosa cells and oocytes during early follicular development obtained by Laser Capture Microdissection
por: Bonnet, Agnes, et al.
Publicado: (2011)

Host factors determine the evolution of infection with Staphylococcus aureus to gangrenous mastitis in goats
por: Rainard, Pascal, et al.
Publicado: (2018)

In silico identification of variations in microRNAs with a potential impact on dairy traits using whole ruminant genome SNP datasets
por: Bourdon, Céline, et al.
Publicado: (2021)

Author Correction: A genome scan for milk production traits in dairy goats reveals two new mutations in Dgat1 reducing milk fat content
por: Martin, Pauline, et al.
Publicado: (2018)

A genome scan for milk production traits in dairy goats reveals two new mutations in Dgat1 reducing milk fat content
por: Martin, Pauline, et al.
Publicado: (2017)

Identification of differential gene expression in in vitro FSH treated pig granulosa cells using suppression subtractive hybridization
por: Bonnet, A, et al.
Publicado: (2006)

A Point Mutation in Suppressor of Cytokine Signalling 2 (Socs2) Increases the Susceptibility to Inflammation of the Mammary Gland while Associated with Higher Body Weight and Size and Higher Milk Production in a Sheep Model
por: Rupp, Rachel, et al.
Publicado: (2015)

Genetic × environment variation in sheep lines bred for divergent resistance to strongyle infection
por: Sallé, Guillaume, et al.
Publicado: (2021)

MP3 : música en Internet /
por: Underhill, Rod
Publicado: (2000)

Cannot write session to /tmp/vufind_sessions/sess_ue1dt2071e087inrtbe479ksnh