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Frequency of HNF4A-P.I463V Variant in the Tunisian North-African Population and Its Relation with Diabetes Mellitus
BACKGROUND: HNF4A-p.I463Vvariant, reported previously in two distinct families suspected of MODY-1, is assessed in this report to determine whether it is a mutation or a polymorphism (frequency >1%). METHODS: 200 Tunisian healthy people were screened for the presence of HNF4A-p.I463V variant, usi...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Tehran University of Medical Sciences
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4402419/ https://www.ncbi.nlm.nih.gov/pubmed/25905084 |
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author | AMARA, Abdelbasset BEN CHARFEDDINE, Ilhem GHÉDIR, Houda MAMAÏ, Ons JEMNI-YACOUB, Saloua CHAIEB, Larbi SAAD, Ali CHADLI-CHAIEB, Molka GRIBAA, Moez |
author_facet | AMARA, Abdelbasset BEN CHARFEDDINE, Ilhem GHÉDIR, Houda MAMAÏ, Ons JEMNI-YACOUB, Saloua CHAIEB, Larbi SAAD, Ali CHADLI-CHAIEB, Molka GRIBAA, Moez |
author_sort | AMARA, Abdelbasset |
collection | PubMed |
description | BACKGROUND: HNF4A-p.I463Vvariant, reported previously in two distinct families suspected of MODY-1, is assessed in this report to determine whether it is a mutation or a polymorphism (frequency >1%). METHODS: 200 Tunisian healthy people were screened for the presence of HNF4A-p.I463V variant, using RFLP-PCR technique and sequencing. Then, the frequency of this variant was estimated in the Tunisian population and compared to other populations registered in genetic databases. We also performed in-silico analysis using PolyPhen2 and Mutation T@sting softwares to assess the probable effect of HNF4A-p.I463V variant. RESULTS: HNF4A-p.I463V had a rare frequency in different populations and was found in 3 control subjects (1.5%) of the studied population. PolyPhen2 predicted that it is a polymorphism, whereas mutation T@sting suggested a probably affected mutant protein. CONCLUSION: HNF4A-p.I463V has a relatively high frequency (>1%) in our control cohort. It is also present in different ethnicities and in- silico analysis showed conflicting results. For these reasons, HNF4A-p.I463V should not be considered as a mutation responsible for MODY-1. |
format | Online Article Text |
id | pubmed-4402419 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Tehran University of Medical Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-44024192015-04-22 Frequency of HNF4A-P.I463V Variant in the Tunisian North-African Population and Its Relation with Diabetes Mellitus AMARA, Abdelbasset BEN CHARFEDDINE, Ilhem GHÉDIR, Houda MAMAÏ, Ons JEMNI-YACOUB, Saloua CHAIEB, Larbi SAAD, Ali CHADLI-CHAIEB, Molka GRIBAA, Moez Iran J Public Health Short Communication BACKGROUND: HNF4A-p.I463Vvariant, reported previously in two distinct families suspected of MODY-1, is assessed in this report to determine whether it is a mutation or a polymorphism (frequency >1%). METHODS: 200 Tunisian healthy people were screened for the presence of HNF4A-p.I463V variant, using RFLP-PCR technique and sequencing. Then, the frequency of this variant was estimated in the Tunisian population and compared to other populations registered in genetic databases. We also performed in-silico analysis using PolyPhen2 and Mutation T@sting softwares to assess the probable effect of HNF4A-p.I463V variant. RESULTS: HNF4A-p.I463V had a rare frequency in different populations and was found in 3 control subjects (1.5%) of the studied population. PolyPhen2 predicted that it is a polymorphism, whereas mutation T@sting suggested a probably affected mutant protein. CONCLUSION: HNF4A-p.I463V has a relatively high frequency (>1%) in our control cohort. It is also present in different ethnicities and in- silico analysis showed conflicting results. For these reasons, HNF4A-p.I463V should not be considered as a mutation responsible for MODY-1. Tehran University of Medical Sciences 2015-03 2015-03 /pmc/articles/PMC4402419/ /pubmed/25905084 Text en Copyright© Iranian Public Health Association & Tehran University of Medical Sciences This work is licensed under a Creative Commons Attribution-NonCommercial 3.0 Unported License which allows users to read, copy, distribute and make derivative works for non-commercial purposes from the material, as long as the author of the original work is cited properly. |
spellingShingle | Short Communication AMARA, Abdelbasset BEN CHARFEDDINE, Ilhem GHÉDIR, Houda MAMAÏ, Ons JEMNI-YACOUB, Saloua CHAIEB, Larbi SAAD, Ali CHADLI-CHAIEB, Molka GRIBAA, Moez Frequency of HNF4A-P.I463V Variant in the Tunisian North-African Population and Its Relation with Diabetes Mellitus |
title | Frequency of HNF4A-P.I463V Variant in the Tunisian North-African Population and Its Relation with Diabetes Mellitus |
title_full | Frequency of HNF4A-P.I463V Variant in the Tunisian North-African Population and Its Relation with Diabetes Mellitus |
title_fullStr | Frequency of HNF4A-P.I463V Variant in the Tunisian North-African Population and Its Relation with Diabetes Mellitus |
title_full_unstemmed | Frequency of HNF4A-P.I463V Variant in the Tunisian North-African Population and Its Relation with Diabetes Mellitus |
title_short | Frequency of HNF4A-P.I463V Variant in the Tunisian North-African Population and Its Relation with Diabetes Mellitus |
title_sort | frequency of hnf4a-p.i463v variant in the tunisian north-african population and its relation with diabetes mellitus |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4402419/ https://www.ncbi.nlm.nih.gov/pubmed/25905084 |
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