Cargando…

Chemical and structural characterization of interstrand cross-links formed between abasic sites and adenine residues in duplex DNA

A new type of interstrand DNA–DNA cross-link between abasic (Ap) sites and 2′-deoxyadenosine (dA) residues was recently reported, but the chemical structure and properties of this lesion were not rigorously established. Here we characterized the nucleoside cross-link remnant released by enzymatic di...

Descripción completa

Detalles Bibliográficos
Autores principales:	Price, Nathan E., Catalano, Michael J., Liu, Shuo, Wang, Yinsheng, Gates, Kent S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2015
Materias:	Chemical Biology and Nucleic Acid Chemistry
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4402519/ https://www.ncbi.nlm.nih.gov/pubmed/25779045 http://dx.doi.org/10.1093/nar/gkv174

Ejemplares similares

Interstrand cross-links arising from strand breaks at true abasic sites in duplex DNA
por: Yang, Zhiyu, et al.
Publicado: (2017)

Interstrand DNA–DNA Cross-Link Formation Between Adenine Residues and Abasic Sites in Duplex DNA
por: Price, Nathan E., et al.
Publicado: (2014)

Effects of Local Sequence, Reaction Conditions, and Various Additives on the Formation and Stability of Interstrand Cross-Links Derived from the Reaction of an Abasic Site with an Adenine Residue in Duplex DNA
por: Amin, Saosan Binth Md., et al.
Publicado: (2022)

Replication and repair of a reduced 2΄-deoxyguanosine-abasic site interstrand cross-link in human cells
por: Price, Nathan E., et al.
Publicado: (2017)

Crystal structure of a nucleoside model for the interstrand cross-link formed by the reaction of 2′-deoxyguanosine and an abasic site in duplex DNA
por: Catalano, Michael J., et al.
Publicado: (2016)

Human abasic endonuclease action on multilesion abasic clusters: implications for radiation-induced biological damage
por: Paap, Brigitte, et al.
Publicado: (2008)

2-Thiouracil deprived of thiocarbonyl function preferentially base pairs with guanine rather than adenine in RNA and DNA duplexes
por: Sochacka, Elzbieta, et al.
Publicado: (2015)

DNA–protein cross-links between abasic DNA damage and mitochondrial transcription factor A (TFAM)
por: Xu, Wenyan, et al.
Publicado: (2022)

Clustered abasic lesions profoundly change the structure and stability of human telomeric G-quadruplexes
por: Kejnovská, Iva, et al.
Publicado: (2017)

Shape-selective recognition of DNA abasic sites by metallohelices: inhibition of human AP endonuclease 1
por: Malina, Jaroslav, et al.
Publicado: (2015)

Correlation of bistranded clustered abasic DNA lesion processing with structural and dynamic DNA helix distortion
por: Bignon, Emmanuelle, et al.
Publicado: (2016)

Escherichia coli HU protein has a role in the repair of abasic sites in DNA
por: Kow, Yoke W., et al.
Publicado: (2007)

Restriction-modification system with methyl-inhibited base excision and abasic-site cleavage activities
por: Fukuyo, Masaki, et al.
Publicado: (2015)

Human TDP1, APE1 and TREX1 repair 3′-DNA–peptide/protein cross-links arising from abasic sites in vitro
por: Wei, Xiaoying, et al.
Publicado: (2022)

Efficient processing of TFO-directed psoralen DNA interstrand crosslinks by the UvrABC nuclease
por: Christensen, Laura A., et al.
Publicado: (2008)

Linking two DNA duplexes with a rigid linker for DNA nanotechnology
por: Tashiro, Ryu, et al.
Publicado: (2015)

Synthesis and triplex-forming properties of oligonucleotides capable of recognizing corresponding DNA duplexes containing four base pairs
por: Ohkubo, Akihiro, et al.
Publicado: (2015)

Nonalternating purine pyrimidine sequences can form stable left-handed DNA duplex by strong topological constraint
por: Li, Lin, et al.
Publicado: (2021)

Quantitative analysis of the efficiency and mutagenic spectra of abasic lesion bypass catalyzed by human Y-family DNA polymerases
por: Sherrer, Shanen M., et al.
Publicado: (2011)

Structure-specific endonuclease activity of SNM1A enables processing of a DNA interstrand crosslink
por: Buzon, Beverlee, et al.
Publicado: (2018)

Triplex-forming properties and enzymatic incorporation of a base-modified nucleotide capable of duplex DNA recognition at neutral pH
por: Rusling, David A
Publicado: (2021)

Cation-dependent cleavage of the duplex form of the subtype-B HIV-1 RNA dimerization initiation site
por: Ennifar, Eric, et al.
Publicado: (2010)

Novel non-specific DNA adenine methyltransferases
por: Drozdz, Marek, et al.
Publicado: (2012)

Determinants of adenine-mutagenesis in diversity-generating retroelements
por: Handa, Sumit, et al.
Publicado: (2020)

Incorporating a guanidine-modified cytosine base into triplex-forming PNAs for the recognition of a C-G pyrimidine–purine inversion site of an RNA duplex
por: Toh, Desiree-Faye Kaixin, et al.
Publicado: (2016)

Mechanism of the extremely high duplex-forming ability of oligonucleotides modified with N-tert-butylguanidine- or N-tert-butyl-N′- methylguanidine-bridged nucleic acids
por: Yamaguchi, Takao, et al.
Publicado: (2023)

Switching G-quadruplex to parallel duplex by molecular rotor clustering
por: Xu, Qiuda, et al.
Publicado: (2022)

Bacterial Ligase D preternary-precatalytic complex performs efficient abasic sites processing at double strand breaks during nonhomologous end joining
por: de Ory, Ana, et al.
Publicado: (2019)

Recognition of 5-methyl-CG and CG base pairs in duplex DNA with high stability using antiparallel-type triplex-forming oligonucleotides with 2-guanidinoethyl-2′-deoxynebularine
por: Notomi, Ryotaro, et al.
Publicado: (2022)

The non-specific adenine DNA methyltransferase M.EcoGII
por: Murray, Iain A, et al.
Publicado: (2018)

Tethered imidazole mediated duplex stabilization and its potential for aptamer stabilization
por: Verdonck, Lars, et al.
Publicado: (2018)

AT-hook peptides bind the major and minor groove of AT-rich DNA duplexes
por: Garabedian, Alyssa, et al.
Publicado: (2022)

Thermal stabilisation of the short DNA duplexes by acridine-4-carboxamide derivatives
por: Kostelansky, Filip, et al.
Publicado: (2022)

Visualization of ligand-induced c-MYC duplex–quadruplex transition and direct exploration of the altered c-MYC DNA-protein interactions in cells
por: Yuan, Jia-Hao, et al.
Publicado: (2022)

Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides
por: Padroni, Giacomo, et al.
Publicado: (2018)

Cleavage of adenine-modified functionalized DNA by type II restriction endonucleases
por: Macíčková-Cahová, Hana, et al.
Publicado: (2009)

Small-molecule activators specific to adenine base editors through blocking the canonical TGF-β pathway
por: Yang, Yudong, et al.
Publicado: (2022)

Single-molecule analysis of i-motif within self-assembled DNA duplexes and nanocircles
por: Megalathan, Anoja, et al.
Publicado: (2019)

The effect of adenine protonation on RNA phosphodiester backbone bond cleavage elucidated by deaza-nucleobase modifications and mass spectrometry
por: Fuchs, Elisabeth, et al.
Publicado: (2019)

Enzymatic Synthesis of Chemical Nuclease Triplex-Forming Oligonucleotides with Gene-Silencing Applications
por: McGorman, Bríonna, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_f93t26a7fchla4rm29qbpbu6ml