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The Chromatin Remodeler CHD8 Is Required for Activation of Progesterone Receptor-Dependent Enhancers

While the importance of gene enhancers in transcriptional regulation is well established, the mechanisms and the protein factors that determine enhancers activity have only recently begun to be unravelled. Recent studies have shown that progesterone receptor (PR) binds regions that display typical f...

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Autores principales: Ceballos-Chávez, María, Subtil-Rodríguez, Alicia, Giannopoulou, Eugenia G., Soronellas, Daniel, Vázquez-Chávez, Elena, Vicent, Guillermo P., Elemento, Olivier, Beato, Miguel, Reyes, José C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4403880/
https://www.ncbi.nlm.nih.gov/pubmed/25894978
http://dx.doi.org/10.1371/journal.pgen.1005174
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author Ceballos-Chávez, María
Subtil-Rodríguez, Alicia
Giannopoulou, Eugenia G.
Soronellas, Daniel
Vázquez-Chávez, Elena
Vicent, Guillermo P.
Elemento, Olivier
Beato, Miguel
Reyes, José C.
author_facet Ceballos-Chávez, María
Subtil-Rodríguez, Alicia
Giannopoulou, Eugenia G.
Soronellas, Daniel
Vázquez-Chávez, Elena
Vicent, Guillermo P.
Elemento, Olivier
Beato, Miguel
Reyes, José C.
author_sort Ceballos-Chávez, María
collection PubMed
description While the importance of gene enhancers in transcriptional regulation is well established, the mechanisms and the protein factors that determine enhancers activity have only recently begun to be unravelled. Recent studies have shown that progesterone receptor (PR) binds regions that display typical features of gene enhancers. Here, we show by ChIP-seq experiments that the chromatin remodeler CHD8 mostly binds promoters under proliferation conditions. However, upon progestin stimulation, CHD8 re-localizes to PR enhancers also enriched in p300 and H3K4me1. Consistently, CHD8 depletion severely impairs progestin-dependent gene regulation. CHD8 binding is PR-dependent but independent of the pioneering factor FOXA1. The SWI/SNF chromatin-remodelling complex is required for PR-dependent gene activation. Interestingly, we show that CHD8 interacts with the SWI/SNF complex and that depletion of BRG1 and BRM, the ATPases of SWI/SNF complex, impairs CHD8 recruitment. We also show that CHD8 is not required for H3K27 acetylation, but contributes to increase accessibility of the enhancer to DNaseI. Furthermore, CHD8 was required for RNAPII recruiting to the enhancers and for transcription of enhancer-derived RNAs (eRNAs). Taken together our data demonstrate that CHD8 is involved in late stages of PR enhancers activation.
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spelling pubmed-44038802015-05-02 The Chromatin Remodeler CHD8 Is Required for Activation of Progesterone Receptor-Dependent Enhancers Ceballos-Chávez, María Subtil-Rodríguez, Alicia Giannopoulou, Eugenia G. Soronellas, Daniel Vázquez-Chávez, Elena Vicent, Guillermo P. Elemento, Olivier Beato, Miguel Reyes, José C. PLoS Genet Research Article While the importance of gene enhancers in transcriptional regulation is well established, the mechanisms and the protein factors that determine enhancers activity have only recently begun to be unravelled. Recent studies have shown that progesterone receptor (PR) binds regions that display typical features of gene enhancers. Here, we show by ChIP-seq experiments that the chromatin remodeler CHD8 mostly binds promoters under proliferation conditions. However, upon progestin stimulation, CHD8 re-localizes to PR enhancers also enriched in p300 and H3K4me1. Consistently, CHD8 depletion severely impairs progestin-dependent gene regulation. CHD8 binding is PR-dependent but independent of the pioneering factor FOXA1. The SWI/SNF chromatin-remodelling complex is required for PR-dependent gene activation. Interestingly, we show that CHD8 interacts with the SWI/SNF complex and that depletion of BRG1 and BRM, the ATPases of SWI/SNF complex, impairs CHD8 recruitment. We also show that CHD8 is not required for H3K27 acetylation, but contributes to increase accessibility of the enhancer to DNaseI. Furthermore, CHD8 was required for RNAPII recruiting to the enhancers and for transcription of enhancer-derived RNAs (eRNAs). Taken together our data demonstrate that CHD8 is involved in late stages of PR enhancers activation. Public Library of Science 2015-04-20 /pmc/articles/PMC4403880/ /pubmed/25894978 http://dx.doi.org/10.1371/journal.pgen.1005174 Text en © 2015 Ceballos-Chávez et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Ceballos-Chávez, María
Subtil-Rodríguez, Alicia
Giannopoulou, Eugenia G.
Soronellas, Daniel
Vázquez-Chávez, Elena
Vicent, Guillermo P.
Elemento, Olivier
Beato, Miguel
Reyes, José C.
The Chromatin Remodeler CHD8 Is Required for Activation of Progesterone Receptor-Dependent Enhancers
title The Chromatin Remodeler CHD8 Is Required for Activation of Progesterone Receptor-Dependent Enhancers
title_full The Chromatin Remodeler CHD8 Is Required for Activation of Progesterone Receptor-Dependent Enhancers
title_fullStr The Chromatin Remodeler CHD8 Is Required for Activation of Progesterone Receptor-Dependent Enhancers
title_full_unstemmed The Chromatin Remodeler CHD8 Is Required for Activation of Progesterone Receptor-Dependent Enhancers
title_short The Chromatin Remodeler CHD8 Is Required for Activation of Progesterone Receptor-Dependent Enhancers
title_sort chromatin remodeler chd8 is required for activation of progesterone receptor-dependent enhancers
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4403880/
https://www.ncbi.nlm.nih.gov/pubmed/25894978
http://dx.doi.org/10.1371/journal.pgen.1005174
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