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A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining
The fungus Pseudozyma antarctica produces a lipase (CalB) with broad substrate specificity, stability, high regio- and enantio-selectivity. It is active in non-aqueous organic solvents and at elevated temperatures. Hence, CalB is a robust biocatalyst for chemical conversions on an industrial scale....
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405274/ https://www.ncbi.nlm.nih.gov/pubmed/25898146 http://dx.doi.org/10.1371/journal.pone.0124882 |
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author | Vaquero, Maria E. de Eugenio, Laura I. Martínez, Maria J. Barriuso, Jorge |
author_facet | Vaquero, Maria E. de Eugenio, Laura I. Martínez, Maria J. Barriuso, Jorge |
author_sort | Vaquero, Maria E. |
collection | PubMed |
description | The fungus Pseudozyma antarctica produces a lipase (CalB) with broad substrate specificity, stability, high regio- and enantio-selectivity. It is active in non-aqueous organic solvents and at elevated temperatures. Hence, CalB is a robust biocatalyst for chemical conversions on an industrial scale. Here we report the in silico mining of public metagenomes and fungal genomes to discover novel lipases with high homology to CalB. The candidates were selected taking into account homology and conserved motifs criteria, as well as, phylogeny and 3D model analyses. The most promising candidate (PlicB) presented interesting structural properties. PlicB was expressed in a heterologous host, purified and partially characterized. Further experiments will allow finding novel catalytic properties with biotechnological interest. |
format | Online Article Text |
id | pubmed-4405274 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-44052742015-05-07 A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining Vaquero, Maria E. de Eugenio, Laura I. Martínez, Maria J. Barriuso, Jorge PLoS One Research Article The fungus Pseudozyma antarctica produces a lipase (CalB) with broad substrate specificity, stability, high regio- and enantio-selectivity. It is active in non-aqueous organic solvents and at elevated temperatures. Hence, CalB is a robust biocatalyst for chemical conversions on an industrial scale. Here we report the in silico mining of public metagenomes and fungal genomes to discover novel lipases with high homology to CalB. The candidates were selected taking into account homology and conserved motifs criteria, as well as, phylogeny and 3D model analyses. The most promising candidate (PlicB) presented interesting structural properties. PlicB was expressed in a heterologous host, purified and partially characterized. Further experiments will allow finding novel catalytic properties with biotechnological interest. Public Library of Science 2015-04-21 /pmc/articles/PMC4405274/ /pubmed/25898146 http://dx.doi.org/10.1371/journal.pone.0124882 Text en © 2015 Vaquero et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Vaquero, Maria E. de Eugenio, Laura I. Martínez, Maria J. Barriuso, Jorge A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining |
title | A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining |
title_full | A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining |
title_fullStr | A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining |
title_full_unstemmed | A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining |
title_short | A Novel CalB-Type Lipase Discovered by Fungal Genomes Mining |
title_sort | novel calb-type lipase discovered by fungal genomes mining |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405274/ https://www.ncbi.nlm.nih.gov/pubmed/25898146 http://dx.doi.org/10.1371/journal.pone.0124882 |
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