Cargando…
A New Myco-Heterotrophic Genus, Yunorchis, and the Molecular Phylogenetic Relationships of the Tribe Calypsoeae (Epidendroideae, Orchidaceae) Inferred from Plastid and Nuclear DNA Sequences
We identified a new holomycotrophic orchid that is related to the myco-heterotrophic Calypsoeae. Because chloroplast genes are primarily lacking or are highly divergent, key morphological characters are either reduced or lost from many myco-heterotrophs, and the phylogenetic relationships of weakly...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4406536/ https://www.ncbi.nlm.nih.gov/pubmed/25902264 http://dx.doi.org/10.1371/journal.pone.0123382 |
_version_ | 1782367781387239424 |
---|---|
author | Zhang, Guo-Qiang Li, Ming-He Su, Yong-Yu Chen, Li-Jun Lan, Si-Ren Liu, Zhong-Jian |
author_facet | Zhang, Guo-Qiang Li, Ming-He Su, Yong-Yu Chen, Li-Jun Lan, Si-Ren Liu, Zhong-Jian |
author_sort | Zhang, Guo-Qiang |
collection | PubMed |
description | We identified a new holomycotrophic orchid that is related to the myco-heterotrophic Calypsoeae. Because chloroplast genes are primarily lacking or are highly divergent, key morphological characters are either reduced or lost from many myco-heterotrophs, and the phylogenetic relationships of weakly supported paraphyletic Calypsoeae within Epidendroideae have been poorly understood in previous molecular systematic studies. Using chloroplast rbcL, psaB, and matK and nuclear Xdh and ITS sequences, we determined the circumscription and systematic positions of the new orchid and the tribe. The results indicate that the epidendroid taxa include most of the clades that are successively sister to the grade of clades representing previously recognized tribes. Calypsoeae comprising four well-supported clades with 12 genera (except for the previous temporarily placed Wullschlaegelia) is supported as a monophyletic and sister clade to Epidendreae (excluding Coeliinae). The new orchid is nested in Calypsoeae and is a sister to Dactylostalix and/or Calypso. This new holomycotrophic orchid presents a subumbel inflorescence that grows underground, and flower with a long pedicel reputing the ground to open and two fragments at the base of the hook, which are obviously morphologically different from those of Calypsoeae. To accommodate this species in the current generic circumscription, a new genus Yunorchis was created. |
format | Online Article Text |
id | pubmed-4406536 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-44065362015-05-07 A New Myco-Heterotrophic Genus, Yunorchis, and the Molecular Phylogenetic Relationships of the Tribe Calypsoeae (Epidendroideae, Orchidaceae) Inferred from Plastid and Nuclear DNA Sequences Zhang, Guo-Qiang Li, Ming-He Su, Yong-Yu Chen, Li-Jun Lan, Si-Ren Liu, Zhong-Jian PLoS One Research Article We identified a new holomycotrophic orchid that is related to the myco-heterotrophic Calypsoeae. Because chloroplast genes are primarily lacking or are highly divergent, key morphological characters are either reduced or lost from many myco-heterotrophs, and the phylogenetic relationships of weakly supported paraphyletic Calypsoeae within Epidendroideae have been poorly understood in previous molecular systematic studies. Using chloroplast rbcL, psaB, and matK and nuclear Xdh and ITS sequences, we determined the circumscription and systematic positions of the new orchid and the tribe. The results indicate that the epidendroid taxa include most of the clades that are successively sister to the grade of clades representing previously recognized tribes. Calypsoeae comprising four well-supported clades with 12 genera (except for the previous temporarily placed Wullschlaegelia) is supported as a monophyletic and sister clade to Epidendreae (excluding Coeliinae). The new orchid is nested in Calypsoeae and is a sister to Dactylostalix and/or Calypso. This new holomycotrophic orchid presents a subumbel inflorescence that grows underground, and flower with a long pedicel reputing the ground to open and two fragments at the base of the hook, which are obviously morphologically different from those of Calypsoeae. To accommodate this species in the current generic circumscription, a new genus Yunorchis was created. Public Library of Science 2015-04-22 /pmc/articles/PMC4406536/ /pubmed/25902264 http://dx.doi.org/10.1371/journal.pone.0123382 Text en © 2015 Zhang et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Zhang, Guo-Qiang Li, Ming-He Su, Yong-Yu Chen, Li-Jun Lan, Si-Ren Liu, Zhong-Jian A New Myco-Heterotrophic Genus, Yunorchis, and the Molecular Phylogenetic Relationships of the Tribe Calypsoeae (Epidendroideae, Orchidaceae) Inferred from Plastid and Nuclear DNA Sequences |
title | A New Myco-Heterotrophic Genus, Yunorchis, and the Molecular Phylogenetic Relationships of the Tribe Calypsoeae (Epidendroideae, Orchidaceae) Inferred from Plastid and Nuclear DNA Sequences |
title_full | A New Myco-Heterotrophic Genus, Yunorchis, and the Molecular Phylogenetic Relationships of the Tribe Calypsoeae (Epidendroideae, Orchidaceae) Inferred from Plastid and Nuclear DNA Sequences |
title_fullStr | A New Myco-Heterotrophic Genus, Yunorchis, and the Molecular Phylogenetic Relationships of the Tribe Calypsoeae (Epidendroideae, Orchidaceae) Inferred from Plastid and Nuclear DNA Sequences |
title_full_unstemmed | A New Myco-Heterotrophic Genus, Yunorchis, and the Molecular Phylogenetic Relationships of the Tribe Calypsoeae (Epidendroideae, Orchidaceae) Inferred from Plastid and Nuclear DNA Sequences |
title_short | A New Myco-Heterotrophic Genus, Yunorchis, and the Molecular Phylogenetic Relationships of the Tribe Calypsoeae (Epidendroideae, Orchidaceae) Inferred from Plastid and Nuclear DNA Sequences |
title_sort | new myco-heterotrophic genus, yunorchis, and the molecular phylogenetic relationships of the tribe calypsoeae (epidendroideae, orchidaceae) inferred from plastid and nuclear dna sequences |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4406536/ https://www.ncbi.nlm.nih.gov/pubmed/25902264 http://dx.doi.org/10.1371/journal.pone.0123382 |
work_keys_str_mv | AT zhangguoqiang anewmycoheterotrophicgenusyunorchisandthemolecularphylogeneticrelationshipsofthetribecalypsoeaeepidendroideaeorchidaceaeinferredfromplastidandnucleardnasequences AT liminghe anewmycoheterotrophicgenusyunorchisandthemolecularphylogeneticrelationshipsofthetribecalypsoeaeepidendroideaeorchidaceaeinferredfromplastidandnucleardnasequences AT suyongyu anewmycoheterotrophicgenusyunorchisandthemolecularphylogeneticrelationshipsofthetribecalypsoeaeepidendroideaeorchidaceaeinferredfromplastidandnucleardnasequences AT chenlijun anewmycoheterotrophicgenusyunorchisandthemolecularphylogeneticrelationshipsofthetribecalypsoeaeepidendroideaeorchidaceaeinferredfromplastidandnucleardnasequences AT lansiren anewmycoheterotrophicgenusyunorchisandthemolecularphylogeneticrelationshipsofthetribecalypsoeaeepidendroideaeorchidaceaeinferredfromplastidandnucleardnasequences AT liuzhongjian anewmycoheterotrophicgenusyunorchisandthemolecularphylogeneticrelationshipsofthetribecalypsoeaeepidendroideaeorchidaceaeinferredfromplastidandnucleardnasequences AT zhangguoqiang newmycoheterotrophicgenusyunorchisandthemolecularphylogeneticrelationshipsofthetribecalypsoeaeepidendroideaeorchidaceaeinferredfromplastidandnucleardnasequences AT liminghe newmycoheterotrophicgenusyunorchisandthemolecularphylogeneticrelationshipsofthetribecalypsoeaeepidendroideaeorchidaceaeinferredfromplastidandnucleardnasequences AT suyongyu newmycoheterotrophicgenusyunorchisandthemolecularphylogeneticrelationshipsofthetribecalypsoeaeepidendroideaeorchidaceaeinferredfromplastidandnucleardnasequences AT chenlijun newmycoheterotrophicgenusyunorchisandthemolecularphylogeneticrelationshipsofthetribecalypsoeaeepidendroideaeorchidaceaeinferredfromplastidandnucleardnasequences AT lansiren newmycoheterotrophicgenusyunorchisandthemolecularphylogeneticrelationshipsofthetribecalypsoeaeepidendroideaeorchidaceaeinferredfromplastidandnucleardnasequences AT liuzhongjian newmycoheterotrophicgenusyunorchisandthemolecularphylogeneticrelationshipsofthetribecalypsoeaeepidendroideaeorchidaceaeinferredfromplastidandnucleardnasequences |