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Global Gene Expression of Kosteletzkya virginica Seedlings Responding to Salt Stress

Soil salinization is becoming a serious threat to crop yield all over the world. Nowadays, acquainting the specific molecular mechanisms underlying various abiotic stresses especially to salt stress should be of great importance. While the development of the high-throughout sequencing technology pro...

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Detalles Bibliográficos
Autores principales: Tang, Xiaoli, Wang, Hongyan, Shao, Chuyang, Shao, Hongbo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4406580/
https://www.ncbi.nlm.nih.gov/pubmed/25901608
http://dx.doi.org/10.1371/journal.pone.0124421
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author Tang, Xiaoli
Wang, Hongyan
Shao, Chuyang
Shao, Hongbo
author_facet Tang, Xiaoli
Wang, Hongyan
Shao, Chuyang
Shao, Hongbo
author_sort Tang, Xiaoli
collection PubMed
description Soil salinization is becoming a serious threat to crop yield all over the world. Nowadays, acquainting the specific molecular mechanisms underlying various abiotic stresses especially to salt stress should be of great importance. While the development of the high-throughout sequencing technology promoted the progress powerfully. The intricate perception, transduction and regulation mechanisms underlying salt stress are being illustrated more and more clearly. As a perennial halophytic plant, Kosteletzkya virginica is able to help us to understand the mechanisms more directly and effectively. We carried out the whole transcriptome analysis on young seedlings with or without salt treatment through high-throughout sequencing technology. The results revealed that the numbers of different expressed transcripts between control and different treatments are 4145 and 9134, respectively. The ORF prediction suggested that there were 94308 ORF out of the 103489 (91.10%) total transcripts. We also carried out further differential expression analysis through gene ontology (GO) classification, cluster of orthologous groups (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. In a word, our transcriptome study on Kosteletzkya virginica would provide direct and effective references for researches on molecular mechanisms of salt-tolerance, extending our view of salt tolerance in plant further. Above all, the related report in this paper is the first about Kosteletzkya virginica.
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spelling pubmed-44065802015-05-07 Global Gene Expression of Kosteletzkya virginica Seedlings Responding to Salt Stress Tang, Xiaoli Wang, Hongyan Shao, Chuyang Shao, Hongbo PLoS One Research Article Soil salinization is becoming a serious threat to crop yield all over the world. Nowadays, acquainting the specific molecular mechanisms underlying various abiotic stresses especially to salt stress should be of great importance. While the development of the high-throughout sequencing technology promoted the progress powerfully. The intricate perception, transduction and regulation mechanisms underlying salt stress are being illustrated more and more clearly. As a perennial halophytic plant, Kosteletzkya virginica is able to help us to understand the mechanisms more directly and effectively. We carried out the whole transcriptome analysis on young seedlings with or without salt treatment through high-throughout sequencing technology. The results revealed that the numbers of different expressed transcripts between control and different treatments are 4145 and 9134, respectively. The ORF prediction suggested that there were 94308 ORF out of the 103489 (91.10%) total transcripts. We also carried out further differential expression analysis through gene ontology (GO) classification, cluster of orthologous groups (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. In a word, our transcriptome study on Kosteletzkya virginica would provide direct and effective references for researches on molecular mechanisms of salt-tolerance, extending our view of salt tolerance in plant further. Above all, the related report in this paper is the first about Kosteletzkya virginica. Public Library of Science 2015-04-22 /pmc/articles/PMC4406580/ /pubmed/25901608 http://dx.doi.org/10.1371/journal.pone.0124421 Text en © 2015 Tang et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Tang, Xiaoli
Wang, Hongyan
Shao, Chuyang
Shao, Hongbo
Global Gene Expression of Kosteletzkya virginica Seedlings Responding to Salt Stress
title Global Gene Expression of Kosteletzkya virginica Seedlings Responding to Salt Stress
title_full Global Gene Expression of Kosteletzkya virginica Seedlings Responding to Salt Stress
title_fullStr Global Gene Expression of Kosteletzkya virginica Seedlings Responding to Salt Stress
title_full_unstemmed Global Gene Expression of Kosteletzkya virginica Seedlings Responding to Salt Stress
title_short Global Gene Expression of Kosteletzkya virginica Seedlings Responding to Salt Stress
title_sort global gene expression of kosteletzkya virginica seedlings responding to salt stress
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4406580/
https://www.ncbi.nlm.nih.gov/pubmed/25901608
http://dx.doi.org/10.1371/journal.pone.0124421
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