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Diagrammatic Analysis of Nonhomogeneous Diffusion

By virtue of its complexity, realistic approaches to describe diffusion in cellular media require the employment of computational methods. Among others, this type of studies has shown that the apparent diffusion coefficient of a macromolecular solute through a cytoplasmic-like medium exhibits a powe...

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Autor principal: Hernández, Julio A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4408758/
https://www.ncbi.nlm.nih.gov/pubmed/25950014
http://dx.doi.org/10.1155/2014/150826
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author Hernández, Julio A.
author_facet Hernández, Julio A.
author_sort Hernández, Julio A.
collection PubMed
description By virtue of its complexity, realistic approaches to describe diffusion in cellular media require the employment of computational methods. Among others, this type of studies has shown that the apparent diffusion coefficient of a macromolecular solute through a cytoplasmic-like medium exhibits a power-law dependence with the excluded volume. Power laws are ubiquitous findings in diverse systems, such as metabolic processes, population dynamics, and communication networks, and have been the object of many interpretative formal approaches. This study introduces a diagrammatic algorithm, inspired in previous ones employed to analyze multicyclic chemical systems, to derive expressions for nonhomogeneous diffusion coefficients and to study the effects of volume exclusion. A most noteworthy result of this work is that midsize diagrams of nonhomogeneous diffusion are already able to exhibit an approximate power-law dependence of the diffusion coefficient with the excluded volume. The employment of the diagrammatic method for the analysis of simple situations may thus prove useful to interpret some properties of larger network systems.
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spelling pubmed-44087582015-05-06 Diagrammatic Analysis of Nonhomogeneous Diffusion Hernández, Julio A. ScientificWorldJournal Research Article By virtue of its complexity, realistic approaches to describe diffusion in cellular media require the employment of computational methods. Among others, this type of studies has shown that the apparent diffusion coefficient of a macromolecular solute through a cytoplasmic-like medium exhibits a power-law dependence with the excluded volume. Power laws are ubiquitous findings in diverse systems, such as metabolic processes, population dynamics, and communication networks, and have been the object of many interpretative formal approaches. This study introduces a diagrammatic algorithm, inspired in previous ones employed to analyze multicyclic chemical systems, to derive expressions for nonhomogeneous diffusion coefficients and to study the effects of volume exclusion. A most noteworthy result of this work is that midsize diagrams of nonhomogeneous diffusion are already able to exhibit an approximate power-law dependence of the diffusion coefficient with the excluded volume. The employment of the diagrammatic method for the analysis of simple situations may thus prove useful to interpret some properties of larger network systems. Hindawi Publishing Corporation 2014 2014-12-31 /pmc/articles/PMC4408758/ /pubmed/25950014 http://dx.doi.org/10.1155/2014/150826 Text en Copyright © 2014 Julio A. Hernández. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Hernández, Julio A.
Diagrammatic Analysis of Nonhomogeneous Diffusion
title Diagrammatic Analysis of Nonhomogeneous Diffusion
title_full Diagrammatic Analysis of Nonhomogeneous Diffusion
title_fullStr Diagrammatic Analysis of Nonhomogeneous Diffusion
title_full_unstemmed Diagrammatic Analysis of Nonhomogeneous Diffusion
title_short Diagrammatic Analysis of Nonhomogeneous Diffusion
title_sort diagrammatic analysis of nonhomogeneous diffusion
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4408758/
https://www.ncbi.nlm.nih.gov/pubmed/25950014
http://dx.doi.org/10.1155/2014/150826
work_keys_str_mv AT hernandezjulioa diagrammaticanalysisofnonhomogeneousdiffusion