Cargando…

Reproducibility of neuroimaging analyses across operating systems

Neuroimaging pipelines are known to generate different results depending on the computing platform where they are compiled and executed. We quantify these differences for brain tissue classification, fMRI analysis, and cortical thickness (CT) extraction, using three of the main neuroimaging packages...

Descripción completa

Detalles Bibliográficos
Autores principales:	Glatard, Tristan, Lewis, Lindsay B., Ferreira da Silva, Rafael, Adalat, Reza, Beck, Natacha, Lepage, Claude, Rioux, Pierre, Rousseau, Marc-Etienne, Sherif, Tarek, Deelman, Ewa, Khalili-Mahani, Najmeh, Evans, Alan C.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2015
Materias:	Neuroscience
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4408913/ https://www.ncbi.nlm.nih.gov/pubmed/25964757 http://dx.doi.org/10.3389/fninf.2015.00012

Ejemplares similares

CBRAIN: a web-based, distributed computing platform for collaborative neuroimaging research
por: Sherif, Tarek, et al.
Publicado: (2014)

Web-based processing of physiological noise in fMRI: addition of the PhysIO toolbox to CBRAIN
por: Valevicius, Darius, et al.
Publicado: (2023)

A Simulation Toolkit for Testing the Sensitivity and Accuracy of Corticometry Pipelines
por: OmidYeganeh, Mona, et al.
Publicado: (2021)

Comparing perturbation models for evaluating stability of neuroimaging pipelines
por: Kiar, Gregory, et al.
Publicado: (2020)

BrainBrowser: distributed, web-based neurological data visualization
por: Sherif, Tarek, et al.
Publicado: (2015)

The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging
por: Paquola, Casey, et al.
Publicado: (2021)

Teaching Computational Reproducibility for Neuroimaging
por: Millman, K. Jarrod, et al.
Publicado: (2018)

TRANSPARENCY AND REPRODUCIBILITY IN THE NEUROIMAGING OF AGING
por: Seaman, Kendra L
Publicado: (2019)

File-based localization of numerical perturbations in data analysis pipelines
por: Salari, Ali, et al.
Publicado: (2020)

What Media Helps, What Media Hurts: A Mixed Methods Survey Study of Coping with COVID-19 Using the Media Repertoire Framework and the Appraisal Theory of Stress
por: Pahayahay, Amber, et al.
Publicado: (2020)

Double-Bind of Recruitment of Older Adults Into Studies of Successful Aging via Assistive Information and Communication Technologies: Mapping Review
por: Khalili-Mahani, Najmeh, et al.
Publicado: (2022)

Affective Game Planning for Health Applications: Quantitative Extension of Gerontoludic Design Based on the Appraisal Theory of Stress and Coping
por: Khalili-Mahani, Najmeh, et al.
Publicado: (2019)

Cyberinfrastructure for Open Science at the Montreal Neurological Institute
por: Das, Samir, et al.
Publicado: (2017)

Play the Pain: A Digital Strategy for Play-Oriented Research and Action
por: Khalili-Mahani, Najmeh, et al.
Publicado: (2021)

To Each Stress Its Own Screen: A Cross-Sectional Survey of the Patterns of Stress and Various Screen Uses in Relation to Self-Admitted Screen Addiction
por: Khalili-Mahani, Najmeh, et al.
Publicado: (2019)

Opportunities for increased reproducibility and replicability of developmental neuroimaging
por: Klapwijk, Eduard T., et al.
Publicado: (2020)

Editorial: Qualitative pain research: Capturing and integrating cultural, social and linguistic data
por: Khalili-Mahani, Najmeh, et al.
Publicado: (2022)

Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging
por: Kennedy, David N., et al.
Publicado: (2019)

Open and reproducible neuroimaging: From study inception to publication
por: Niso, Guiomar, et al.
Publicado: (2022)

QuNex—An integrative platform for reproducible neuroimaging analytics
por: Ji, Jie Lisa, et al.
Publicado: (2023)

Boutiques: a flexible framework to integrate command-line applications in computing platforms
por: Glatard, Tristan, et al.
Publicado: (2018)

Using Make for Reproducible and Parallel Neuroimaging Workflow and Quality-Assurance
por: Askren, Mary K., et al.
Publicado: (2016)

A Practical Guide for Improving Transparency and Reproducibility in Neuroimaging Research
por: Gorgolewski, Krzysztof J., et al.
Publicado: (2016)

MINC 2.0: A Flexible Format for Multi-Modal Images
por: Vincent, Robert D., et al.
Publicado: (2016)

Toward a digital citizen lab for capturing data about alternative ways of self-managing chronic pain: An attitudinal user study
por: Khalili-Mahani, Najmeh, et al.
Publicado: (2022)

Effect of spinal anesthesia-induced deafferentation on pain processing in healthy male volunteers: A task-related fMRI study
por: Sitsen, Elske, et al.
Publicado: (2022)

Reproducible neuroimaging features for diagnosis of autism spectrum disorder with machine learning
por: Mellema, Cooper J., et al.
Publicado: (2022)

Neurodesk: An accessible, flexible, and portable data analysis environment for reproducible neuroimaging
por: Renton, Angela I., et al.
Publicado: (2023)

A Serverless Tool for Platform Agnostic Computational Experiment Management
por: Kiar, Gregory, et al.
Publicado: (2019)

A Benchmark of Data Stream Classification for Human Activity Recognition on Connected Objects
por: Khannouz, Martin, et al.
Publicado: (2020)

Sharing brain mapping statistical results with the neuroimaging data model
por: Maumet, Camille, et al.
Publicado: (2016)

Childhood cognitive ability accounts for associations between cognitive ability and brain cortical thickness in old age
por: Karama, S, et al.
Publicado: (2014)

Reproducibility and Bias in Healthy Brain Segmentation: Comparison of Two Popular Neuroimaging Platforms
por: Tudorascu, Dana L., et al.
Publicado: (2016)

Reproducible Large-Scale Neuroimaging Studies with the OpenMOLE Workflow Management System
por: Passerat-Palmbach, Jonathan, et al.
Publicado: (2017)

Toward a scalable framework for reproducible processing of volumetric, nanoscale neuroimaging datasets
por: Johnson, Erik C, et al.
Publicado: (2020)

Lessons learned: A neuroimaging research center's transition to open and reproducible science
por: Bush, Keith A., et al.
Publicado: (2022)

Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility
por: Martin, Dylan, et al.
Publicado: (2023)

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods
por: Gorgolewski, Krzysztof J., et al.
Publicado: (2017)

Reproducibility of findings in modern PET neuroimaging: insight from the NRM2018 grand challenge
por: Veronese, Mattia, et al.
Publicado: (2021)

The association between information and communication technologies, loneliness and social connectedness: A scoping review
por: Petersen, Berkley, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_8ta4o01o3sqkncmp5lnfc236di