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The Role of Ala198 in the Stability and Coenzyme Specificity of Bacterial Formate Dehydrogenases
It has been shown by an X-ray structural analysis that the amino acid residues Ala198, which are located in the coenzyme-binding domain of NAD(+)-dependent formate dehydrogenases (EC 1.2.1.2., FDH) from bacteria Pseudomonas sp.101 and Moraxella sp. C-1 (PseFDH and MorFDH, respectively), have non-opt...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
A.I. Gordeyev
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4410396/ https://www.ncbi.nlm.nih.gov/pubmed/25927002 |
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author | Alekseeva, A. A. Fedorchuk, V. V. Zarubina, S. A. Sadykhov, E. G. Matorin, A. D. Savin, S. S. Tishkov, V. I. |
author_facet | Alekseeva, A. A. Fedorchuk, V. V. Zarubina, S. A. Sadykhov, E. G. Matorin, A. D. Savin, S. S. Tishkov, V. I. |
author_sort | Alekseeva, A. A. |
collection | PubMed |
description | It has been shown by an X-ray structural analysis that the amino acid residues Ala198, which are located in the coenzyme-binding domain of NAD(+)-dependent formate dehydrogenases (EC 1.2.1.2., FDH) from bacteria Pseudomonas sp.101 and Moraxella sp. C-1 (PseFDH and MorFDH, respectively), have non-optimal values of the angles ψ and φ. These residues were replaced with Gly by site-directed mutagenesis. The mutants PseFDH A198G and MorFDH A198G were expressed in E.coli cells and obtained in active and soluble forms with more than 95% purity. The study of thermal inactivation kinetics showed that the mutation A198G results in a 2.5- fold increase in stability compared to one for the wild-type enzymes. Kinetic experiments indicate that A198G replacement reduces the K(M)(NAD+) value from 60 to 35 and from 80 to 45 μM for PseFDH and MorFDH, respectively, while the K(M)(HCOO-) value remains practically unchanged. Amino acid replacement A198G was also added to the mutant PseFDH D221S with the coenzyme specificity changed from NAD(+) to NADP(+). In this case, an increase in thermal stability was also observed, but the influence of the mutation on the kinetic parameters was opposite: KM increased from 190 to 280 μM and from 43 to 89 mM for NADP(+) and formate, respectively. According to the data obtained, inference could be drawn that earlier formate dehydrogenase from bacterium Pseudomonas sp. 101 was specific to NADP(+), but not to NAD(+). |
format | Online Article Text |
id | pubmed-4410396 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | A.I. Gordeyev |
record_format | MEDLINE/PubMed |
spelling | pubmed-44103962015-04-29 The Role of Ala198 in the Stability and Coenzyme Specificity of Bacterial Formate Dehydrogenases Alekseeva, A. A. Fedorchuk, V. V. Zarubina, S. A. Sadykhov, E. G. Matorin, A. D. Savin, S. S. Tishkov, V. I. Acta Naturae Research Article It has been shown by an X-ray structural analysis that the amino acid residues Ala198, which are located in the coenzyme-binding domain of NAD(+)-dependent formate dehydrogenases (EC 1.2.1.2., FDH) from bacteria Pseudomonas sp.101 and Moraxella sp. C-1 (PseFDH and MorFDH, respectively), have non-optimal values of the angles ψ and φ. These residues were replaced with Gly by site-directed mutagenesis. The mutants PseFDH A198G and MorFDH A198G were expressed in E.coli cells and obtained in active and soluble forms with more than 95% purity. The study of thermal inactivation kinetics showed that the mutation A198G results in a 2.5- fold increase in stability compared to one for the wild-type enzymes. Kinetic experiments indicate that A198G replacement reduces the K(M)(NAD+) value from 60 to 35 and from 80 to 45 μM for PseFDH and MorFDH, respectively, while the K(M)(HCOO-) value remains practically unchanged. Amino acid replacement A198G was also added to the mutant PseFDH D221S with the coenzyme specificity changed from NAD(+) to NADP(+). In this case, an increase in thermal stability was also observed, but the influence of the mutation on the kinetic parameters was opposite: KM increased from 190 to 280 μM and from 43 to 89 mM for NADP(+) and formate, respectively. According to the data obtained, inference could be drawn that earlier formate dehydrogenase from bacterium Pseudomonas sp. 101 was specific to NADP(+), but not to NAD(+). A.I. Gordeyev 2015 /pmc/articles/PMC4410396/ /pubmed/25927002 Text en Copyright ® 2015 Park-media Ltd. http://creativecommons.org/licenses/by/2.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Alekseeva, A. A. Fedorchuk, V. V. Zarubina, S. A. Sadykhov, E. G. Matorin, A. D. Savin, S. S. Tishkov, V. I. The Role of Ala198 in the Stability and Coenzyme Specificity of Bacterial Formate Dehydrogenases |
title | The Role of Ala198 in the Stability and Coenzyme Specificity of Bacterial Formate Dehydrogenases |
title_full | The Role of Ala198 in the Stability and Coenzyme Specificity of Bacterial Formate Dehydrogenases |
title_fullStr | The Role of Ala198 in the Stability and Coenzyme Specificity of Bacterial Formate Dehydrogenases |
title_full_unstemmed | The Role of Ala198 in the Stability and Coenzyme Specificity of Bacterial Formate Dehydrogenases |
title_short | The Role of Ala198 in the Stability and Coenzyme Specificity of Bacterial Formate Dehydrogenases |
title_sort | role of ala198 in the stability and coenzyme specificity of bacterial formate dehydrogenases |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4410396/ https://www.ncbi.nlm.nih.gov/pubmed/25927002 |
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